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  1. @book{Dominik201408,
  2. keywords = {org-mode},
  3. url = {http://amazon.com/o/ASIN/9881327709/},
  4. isbn = 9789881327703,
  5. year = 2014,
  6. publisher = {Samurai Media Limited},
  7. author = {Carsten Dominik},
  8. title = {The Org Mode 8 Reference Manual - Organize your life with GNU
  9. Emacs},
  10. }
  11. @article{xu-2015-relat-between,
  12. title = {Relationships Between the Surface Electronic and Chemical
  13. Properties of Doped 4d and 5d Late Transition Metal Dioxides},
  14. eid = 104703,
  15. url =
  16. "http://scitation.aip.org/content/aip/journal/jcp/142/10/10.1063/1.4914093",
  17. doi = {10.1063/1.4914093},
  18. year = 2015,
  19. pages = 104703,
  20. number = 10,
  21. volume = 142,
  22. journal = "The Journal of Chemical Physics",
  23. keywords = {DESC0004031, early-career, orgmode},
  24. author = "Xu, Zhongnan and Kitchin, John R.",
  25. }
  26. @article{xu-2015-linear-respon,
  27. title = {A Linear Response {DFT}+{U} Study of Trends in the Oxygen
  28. Evolution Activity of Transition Metal Rutile Dioxides},
  29. eprint = { http://dx.doi.org/10.1021/jp511426q },
  30. url = { http://dx.doi.org/10.1021/jp511426q },
  31. doi = {10.1021/jp511426q},
  32. year = 2015,
  33. pages = {4827-4833},
  34. number = 9,
  35. volume = 119,
  36. journal = {The Journal of Physical Chemistry C},
  37. keywords = {DESC0004031, early-career, orgmode, },
  38. author = {Xu, Zhongnan and Rossmeisl, Jan and Kitchin, John R.},
  39. }
  40. @article{boes-2015-suppor-infor,
  41. title = {Supporting Information: Estimating Bulk-Composition-Dependent
  42. \ce{H2} Adsorption Energies on \ce{Cu_{x}Pd_{1-x}} Alloy (111)
  43. Surfaces},
  44. url =
  45. {http://pubs.acs.org/doi/suppl/10.1021/cs501585k/suppl_file/cs501585k_si_001.pdf},
  46. doi = {10.1021/cs501585k},
  47. year = 2015,
  48. pages = {1020-1026},
  49. volume = 5,
  50. journal = {ACS Catalysis},
  51. keywords = {orgmode},
  52. author = {Jacob R. Boes and Gamze Gumuslu and James B. Miller and Andrew
  53. J. Gellman and John R. Kitchin},
  54. }
  55. @article{boes-2015-estim-bulk,
  56. title = {Estimating Bulk-Composition-Dependent \ce{H2} Adsorption
  57. Energies on \ce{Cu_{x}Pd_{1-x}} Alloy (111) Surfaces},
  58. url = {http://dx.doi.org/10.1021/cs501585k},
  59. doi = {10.1021/cs501585k},
  60. year = 2015,
  61. pages = {1020-1026},
  62. volume = 5,
  63. keywords = {orgmode},
  64. journal = {ACS Catalysis},
  65. author = {Jacob R. Boes and Gamze Gumuslu and James B. Miller and Andrew
  66. J. Gellman and John R. Kitchin},
  67. }
  68. @article{curnan-2014-effec-concen,
  69. title = {Effects of Concentration, Crystal Structure, Magnetism, and
  70. Electronic Structure Method on First-Principles Oxygen Vacancy
  71. Formation Energy Trends in Perovskites},
  72. eprint = { http://dx.doi.org/10.1021/jp507957n },
  73. url = {http://dx.doi.org/10.1021/jp507957n},
  74. doi = {10.1021/jp507957n},
  75. year = 2014,
  76. pages = {28776-28790},
  77. number = 49,
  78. volume = 118,
  79. journal = {The Journal of Physical Chemistry C},
  80. keywords = {orgmode, },
  81. author = {Curnan, Matthew T. and Kitchin, John R.},
  82. }
  83. @article{miller-2014-simul-temper,
  84. title = {Simulating Temperature Programmed Desorption of Oxygen on
  85. {P}t(111) Using {DFT} Derived Coverage Dependent Desorption
  86. Barriers},
  87. url = {http://dx.doi.org/10.1007/s11244-013-0166-3},
  88. doi = {10.1007/s11244-013-0166-3},
  89. year = 2014,
  90. pages = {106-117},
  91. number = {1-4},
  92. volume = 57,
  93. journal = {Topics in Catalysis},
  94. keywords = {DESC0004031, early-career, orgmode, },
  95. author = {Spencer D. Miller and Vladimir V. Pushkarev and Andrew
  96. J. Gellman and John R. Kitchin},
  97. }
  98. @article{xu-2014-probin-cover,
  99. title = {Probing the Coverage Dependence of Site and Adsorbate
  100. Configurational Correlations on (111) Surfaces of Late
  101. Transition Metals},
  102. url = {http://dx.doi.org/10.1021/jp508805h},
  103. doi = {10.1021/jp508805h},
  104. year = 2014,
  105. pages = {25597-25602},
  106. number = 44,
  107. volume = 118,
  108. journal = {J. Phys. Chem. C},
  109. keywords = {DESC0004031, early-career, orgmode, },
  110. author = {Zhongnan Xu and John R. Kitchin},
  111. }
  112. @article{xu-2014-relat-elect,
  113. title = {Relating the Electronic Structure and Reactivity of the 3d
  114. Transition Metal Monoxide Surfaces},
  115. abstract = "Abstract We performed a series of density functional theory
  116. calculations of dissociative oxygen adsorption on fcc metals
  117. and their corresponding rocksalt monoxides to elucidate the
  118. relationship between the oxide electronic structure and its
  119. corresponding reactivity. We decomposed the dissociative
  120. adsorption energy of oxygen on an oxide surface into a sum of
  121. the adsorption energy on the metal and a change in adsorption
  122. energy caused by both expanding and oxidizing the lattice. We
  123. were able to identify the key features of the electronic
  124. structure that explains the trends in adsorption energies on
  125. 3d transition metal monoxide surfaces. ",
  126. issn = "1566-7367",
  127. url = {http://dx.doi.org/10.1016/j.catcom.2013.10.028},
  128. doi = {10.1016/j.catcom.2013.10.028},
  129. year = 2014,
  130. pages = {60-64},
  131. volume = 52,
  132. journal = {Catalysis Communications},
  133. keywords = {DESC0004031, early-career, orgmode, },
  134. author = {Zhongnan Xu and John R. Kitchin},
  135. }
  136. @article{mehta-2014-ident-poten,
  137. title = {Identifying Potential \ce{BO2} Oxide Polymorphs for Epitaxial
  138. Growth Candidates},
  139. eprint = {http://pubs.acs.org/doi/pdf/10.1021/am4059149},
  140. url = {http://dx.doi.org/10.1021/am4059149},
  141. doi = {10.1021/am4059149},
  142. year = 2014,
  143. pages = {3630-3639},
  144. number = 5,
  145. volume = 6,
  146. journal = {ACS Appl. Mater. Interfaces},
  147. keywords = {orgmode, },
  148. author = {Prateek Mehta and Paul A. Salvador and John R. Kitchin},
  149. }
  150. @article{hallenbeck-2013-effec,
  151. title = {Effects of \ce{O_2} and \ce{SO_2} on the Capture Capacity of a
  152. Primary-Amine Based Polymeric \ce{CO_2} Sorbent},
  153. eprint = "http://pubs.acs.org/doi/pdf/10.1021/ie400582a",
  154. url = "http://pubs.acs.org/doi/abs/10.1021/ie400582a",
  155. doi = "10.1021/ie400582a",
  156. year = 2013,
  157. pages = "10788-10794",
  158. journal = "Industrial \& Engineering Chemistry Research",
  159. keywords = {RUA, orgmode},
  160. author = "Hallenbeck, Alexander P. and Kitchin, John R.",
  161. }
  162. @article{kitchin-2016-autom-data,
  163. abstract = "In the current scientific publishing landscape, there is a
  164. need for an authoring workflow that easily integrates data and
  165. code into manuscripts and that enables the data and code to be
  166. published in reusable form. Automated embedding of data and
  167. code into published output will enable superior communication
  168. and data archiving. In this work, we demonstrate a proof of
  169. concept for a workflow, org-mode, which successfully provides
  170. this authoring capability and workflow integration. We
  171. illustrate this concept in a series of examples for potential
  172. uses of this workflow. First, we use data on citation counts
  173. to compute the h-index of an author, and show two code
  174. examples for calculating the h-index. The source for each
  175. example is automatically embedded in the PDF during the export
  176. of the document. We demonstrate how data can be embedded in
  177. image files, which themselves are embedded in the document.
  178. Finally, metadata about the embedded files can be
  179. automatically included in the exported PDF, and accessed by
  180. computer programs. In our customized export, we embedded
  181. metadata about the attached files in the PDF in an Info field.
  182. A computer program could parse this output to get a list of
  183. embedded files and carry out analyses on them. Authoring tools
  184. such as Emacs + org-mode can greatly facilitate the
  185. integration of data and code into technical writing. These
  186. tools can also automate the embedding of data into document
  187. formats intended for consumption.",
  188. author = "Kitchin, John R. and Van Gulick, Ana E. and Zilinski, Lisa D.",
  189. keywords = {orgmode},
  190. doi = "10.1007/s00799-016-0173-7",
  191. issn = "1432-1300",
  192. journal = "International Journal on Digital Libraries",
  193. pages = "1--6",
  194. title = {Automating Data Sharing Through Authoring Tools},
  195. url = "http://dx.doi.org/10.1007/s00799-016-0173-7",
  196. year = 2016,
  197. }
  198. @article{kitchin-2015-data-surfac-scien,
  199. author = "John R. Kitchin",
  200. title = {Data Sharing in Surface Science},
  201. journal = "Surface Science ",
  202. volume = {647},
  203. pages = {103-107},
  204. year = 2015,
  205. doi = {10.1016/j.susc.2015.05.007},
  206. url =
  207. "http://www.sciencedirect.com/science/article/pii/S0039602815001326",
  208. issn = "0039-6028",
  209. keywords = {DESC0004031, early-career, orgmode, Data sharing },
  210. }
  211. @article{kitchin-2015-examp,
  212. author = {Kitchin, John R.},
  213. title = {Examples of Effective Data Sharing in Scientific Publishing},
  214. journal = {ACS Catalysis},
  215. volume = {5},
  216. number = {6},
  217. pages = {3894-3899},
  218. year = 2015,
  219. doi = {10.1021/acscatal.5b00538},
  220. url = { http://dx.doi.org/10.1021/acscatal.5b00538 },
  221. keywords = {DESC0004031, early-career, orgmode, Data sharing },
  222. eprint = { http://dx.doi.org/10.1021/acscatal.5b00538 },
  223. }
  224. @online{jkitchin76:online,
  225. title = {jkitchin/org-ref: org-mode modules for citations,
  226. cross-references, bibliographies in org-mode and useful bibtex
  227. tools to go with it.},
  228. url = {https://github.com/jkitchin/org-ref},
  229. urldate = {12/04/2016}
  230. }
  231. @book{chen-2006-handb-data-visual,
  232. author = {Hrsg. Chun-houh Chen ; Hrsg. Wolfgang H{\"a}rdle ; Hrsg.
  233. Antony Unwin},
  234. title = {Handbook of Data Visualization},
  235. year = 2006,
  236. publisher = {Springer Berlin},
  237. url = {http://www.worldcat.org/oclc/150289486?referer=xid},
  238. city = {Berlin},
  239. ed = {1. Ed.},
  240. form = {BA},
  241. isbn = 9783540330363,
  242. lang = {eng},
  243. lccn = 2007931825,
  244. oclcnum = {150289486 214357554 232302403 314615038 474712418 494787249
  245. 645208009 743424036 751135412 76799021 804152581 849253364
  246. 873514520 612218650},
  247. }
  248. @article{geng-2017-first-princ,
  249. author = {Feiyang Geng and Jacob R. Boes and John R. Kitchin},
  250. title = {First-Principles Study of the {Cu-Pd} Phase Diagram},
  251. journal = {Calphad},
  252. volume = 56,
  253. pages = {224-229},
  254. year = 2017,
  255. doi = {10.1016/j.calphad.2017.01.009},
  256. url = {https://doi.org/10.1016/j.calphad.2017.01.009},
  257. DATE_ADDED = {Wed Feb 22 09:13:55 2017},
  258. }
  259. @article{boes-2017-model-segreg,
  260. author = {Boes, Jacob Russell and Kitchin, John R.},
  261. title = {Modeling Segregation on {AuPd}(111) Surfaces With Density
  262. Functional Theory and Monte Carlo Simulations},
  263. journal = {The Journal of Physical Chemistry C},
  264. volume = {121},
  265. number = {6},
  266. pages = {3479-3487},
  267. year = 2017,
  268. doi = {10.1021/acs.jpcc.6b12752},
  269. url = {https://doi.org/10.1021/acs.jpcc.6b12752},
  270. eprint = { http://dx.doi.org/10.1021/acs.jpcc.6b12752 },
  271. }
  272. @article{xu-2017-first-princ,
  273. author = {Xu, Zhongnan and Salvador, Paul A. and Kitchin, John R.},
  274. title = {First-Principles Investigation of the Epitaxial Stabilization
  275. of Oxide Polymorphs: \ce{TiO2} on \ce{(Sr,Ba)TiO3}},
  276. journal = {ACS Applied Materials \& Interfaces},
  277. volume = {9},
  278. number = {4},
  279. pages = {4106-4118},
  280. year = 2017,
  281. doi = {10.1021/acsami.6b11791},
  282. url = {https://doi.org/10.1021/acsami.6b11791},
  283. eprint = { http://dx.doi.org/10.1021/acsami.6b11791 },
  284. note = {PMID: 28004912},
  285. }
  286. @article{boes-2017-neural-networ,
  287. author = {Jacob R. Boes and John R. Kitchin},
  288. title = {Neural Network Predictions of Oxygen Interactions on a Dynamic
  289. {Pd} Surface},
  290. journal = {Molecular Simulation},
  291. pages = {1-9},
  292. year = 2017,
  293. doi = {10.1080/08927022.2016.1274984},
  294. url = {https://doi.org/10.1080/08927022.2016.1274984},
  295. keywords = {CBET-1506770, orgmode},
  296. }
  297. @article{boes-2016-neural-networ,
  298. author = {Jacob R. Boes and Mitchell C. Groenenboom and John A. Keith
  299. and John R. Kitchin},
  300. title = {Neural Network and {Reaxff} Comparison for {Au} Properties},
  301. journal = {Int. J. Quantum Chem.},
  302. volume = 116,
  303. number = 13,
  304. pages = {979-987},
  305. year = 2016,
  306. doi = {10.1002/qua.25115},
  307. url = {http://dx.doi.org/10.1002/qua.25115},
  308. issn = {1097-461X},
  309. keywords = {Kohn-Sham density functional theory, neural networks, reactive
  310. force fields, potential energy surfaces, machine learning},
  311. }