### BREAKPOINTS .ESSBP. <- new.env() ### DEBUG/UNDEBUG .ess_find_funcs <- function(env) { objs <- ls(envir = env, all.names = TRUE) if (length(objs) > 0) objs <- objs[sapply(objs, exists, envir = env, mode = 'function', inherits = FALSE)] objs } .ess_all_functions <- function(packages = c(), env = NULL) { if(is.null(env)) env <- parent.frame() empty <- emptyenv() coll <- list() for(p in packages){ ## package might not be attached try( { objNS <- .ess_find_funcs(asNamespace(p)) objPKG <- .ess_find_funcs(as.environment(paste0('package:', p))) objNS <- setdiff(objNS, objPKG) if(length(objPKG)) coll[[length(coll) + 1]] <- paste0(p, ':::', objNS) }, silent = TRUE) } while(!identical(empty, env)){ coll[[length(coll) + 1]] <- .ess_find_funcs(env) env <- parent.env(env) } grep('^\\.ess', unlist(coll, use.names = FALSE), invert = TRUE, value = TRUE) } .ess_dbg_flag_for_debuging <- function(fname){ all <- utils::getAnywhere(fname) if(length(all$obj) == 0){ msg <- sprintf("No functions names '%s' found", fname) } else { msg <- sprintf("Flagged '%s' for debugging", fname) tryCatch(lapply(all$obj, debug), error = function(e){ msg <- paste0("Error: ", e$message) }) } cat(msg) .ess_mpi_message(msg) } .ess_dbg_getTracedAndDebugged <- function() { packages <- base::.packages() tr_state <- tracingState(FALSE) on.exit(tracingState(tr_state)) generics <- methods::getGenerics() all_traced <- c() for(i in seq_along(generics)){ genf <- methods::getGeneric(generics[[i]], package=generics@package[[i]]) if(!is.null(genf)){ ## might happen !! v.2.13 menv <- methods::getMethodsForDispatch(genf) traced <- unlist(eapply(menv, is, 'traceable', all.names=TRUE)) if(length(traced) && any(traced)) all_traced <- c(paste(generics[[i]],':', names(traced)[traced],sep=''), all_traced) tfn <- getFunction(generics[[i]], mustFind=FALSE, where = .GlobalEnv) if(!is.null(tfn ) && is(tfn, 'traceable')) # if the default is traced, it does not appear in the menv :() all_traced <- c(generics[[i]], all_traced) } } debugged_pkg <- unlist(lapply(packages, function(pkgname){ ns <- asNamespace(pkgname) funcs <- .ess_find_funcs(ns) dbged <- funcs[unlist(lapply(funcs, function(f){ isdebugged(get(f, envir = ns, inherits = FALSE)) }))] if(length(dbged)) paste0(pkgname, ':::`', dbged, '`') })) env <- parent.frame() ## traced function don't appear here. Not realy needed and would affect performance. all <- .ess_all_functions(packages = packages, env = env) which_deb <- lapply(all, function(nm){ ## if isdebugged is called with string it doess find tryCatch(isdebugged(get(nm, envir = env)), error = function(e) FALSE) ## try(eval(substitute(isdebugged(nm), list(nm = as.name(nm)))), silent = T) }) debugged <- all[which(unlist(which_deb, recursive=FALSE, use.names=FALSE))] unique(c(debugged_pkg, debugged, all_traced)) } .ess_dbg_UntraceOrUndebug <- function(name, env = parent.frame()) { tr_state <- tracingState(FALSE) on.exit(tracingState(tr_state)) if( grepl('::', name) ){ ## foo:::bar name eval(parse(text = sprintf('undebug(%s)', name))) }else{ ## name is a name of a function to be undebugged or has a form ## name:Class1#Class2#Class3 for traced methods name <- strsplit(name, ':', fixed = TRUE)[[1]] if( length(name)>1 ){ ## a method fun <- name[[1]] sig <- strsplit(paste(name[-1], collapse=''), '#', fixed=TRUE)[[1]] untrace(fun, signature = sig) }else{ ## function if( is(getFunction(name, where = parent.frame()), 'traceable') ) untrace(name) else if(grepl(":", name)) undebug(name) else undebug(get(name, envir = env)) }} } .ess_dbg_UndebugALL <- function(funcs) { tr_state <- tracingState(FALSE) on.exit(tracingState(tr_state)) env <- parent.frame() invisible(lapply(funcs, function( nm ) { ## ugly tryCatch, but there might be several names pointing to the ## same function, like foo:::bar and bar. An alternative would be ## to call .ess_dbg_getTracedAndDebugged each time but that might ## be ery slow try(.ess_dbg_UntraceOrUndebug(nm, env = env), TRUE) })) } ### WATCH .ess_watch_expressions <- list() .ess_watch_eval <- function() { env <- as.environment("ESSR") exps <- get('.ess_watch_expressions', envir = env) if(length(exps) == 0) { ## using old style so this can be parsed by R 1.9.1 (e.g): cat('\n# Watch list is empty!\n', '# a append new expression', '# i insert new expression', '# k kill', '# e edit the expression', '# r rename', '# n/p navigate', '# u/d,U move the expression up/down', '# q kill the buffer', sep="\n") } else { .parent_frame <- parent.frame() .essWEnames <- allNames(exps) len0p <- !nzchar(.essWEnames) .essWEnames[len0p] <- seq_along(len0p)[len0p] for(i in seq_along(exps)) { cat('\n@---- ', .essWEnames[[i]], ' ', rep.int('-', max(0, 35 - nchar(.essWEnames[[i]]))), '-@\n', sep = '') cat(paste('@---:', deparse(exps[[i]][[1]])), ' \n', sep = '') tryCatch(print(eval(exps[[i]], envir = .parent_frame)), error = function(e) cat('Error:', e$message, '\n' ), warning = function(w) cat('warning: ', w$message, '\n' )) } } } .ess_watch_assign_expressions <- function(elist) { assign(".ess_watch_expressions", elist, envir = as.environment("ESSR")) } .ess_log_eval <- function(log_name) { env <- as.environment("ESSR") if(!exists(log_name, envir = env, inherits = FALSE)) assign(log_name, list(), envir = env) log <- get(log_name, envir = env, inherits = FALSE) .essWEnames <- allNames(.ess_watch_expressions) cur_log <- list() .parent_frame <- parent.frame() for(i in seq_along(.ess_watch_expressions)) { capture.output( { cur_log[[i]] <- tryCatch(eval(.ess_watch_expressions[[i]]), envir = .parent_frame, error = function(e) paste('Error:', e$message, '\n'), warning = function(w) paste('warning: ', w$message, '\n')) if(is.null(cur_log[i][[1]])) cur_log[i] <- list(NULL) }) } names(cur_log) <- .essWEnames assign(log_name, c(log, list(cur_log)), envir = env) invisible(NULL) } .ess_package_attached <- function(pack_name){ as.logical(match(paste0("package:", pack_name), search())) } ## magrittr debug_pipe .ess_pipe_browser <- function(x){ if(is.list(x)) evalq({ browser(skipCalls = 2) x }, envir = x) else if(is.environment(x)) ## enclos argumentn has no effect for unclear reason, need to hack eval(bquote({ x <- .(environment()) browser(skipCalls = 2) x }), envir = x) else { browser(skipCalls = 0) x } }