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1507 строки
69 KiB
1507 строки
69 KiB
;;; bibtex-completion.el --- A BibTeX backend for completion frameworks
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;; Author: Titus von der Malsburg <malsburg@posteo.de>
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;; Justin Burkett <justin@burkett.cc>
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;; Maintainer: Titus von der Malsburg <malsburg@posteo.de>
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;; Version: 1.0.0
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;; Package-Requires: ((parsebib "1.0") (s "1.9.0") (dash "2.6.0") (f "0.16.2") (cl-lib "0.5"))
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;; This program is free software; you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation, either version 3 of the License, or
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;; (at your option) any later version.
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;; This program is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;; You should have received a copy of the GNU General Public License
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;; along with this program. If not, see <http://www.gnu.org/licenses/>.
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;;; Commentary:
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;; A BibTeX backend for completion frameworks
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;; There are currently two fronends: helm-bibtex and ivy-bibtex.
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;;
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;; See the github page for details:
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;;
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;; https://github.com/tmalsburg/helm-bibtex
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;;; Code:
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(require 'browse-url)
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(require 'parsebib)
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(require 'cl-lib)
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(require 'dash)
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(require 's)
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(require 'f)
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(require 'biblio)
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(require 'filenotify)
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;; Silence byte-compiler
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(declare-function reftex-what-macro "reftex-parse")
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(declare-function reftex-get-bibfile-list "reftex-cite")
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(declare-function outline-show-all "outline")
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(declare-function org-narrow-to-subtree "org")
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(declare-function org-cycle-hide-drawers "org")
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(declare-function org-find-property "org")
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(declare-function org-show-entry "org")
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(declare-function org-entry-get "org")
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(declare-function org-element-parse-buffer "org-element")
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(declare-function org-element-map "org-element")
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(declare-function org-element-property "org-element")
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(defgroup bibtex-completion nil
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"Helm plugin for searching entries in a BibTeX bibliography."
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:group 'completion)
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(defcustom bibtex-completion-bibliography nil
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"The BibTeX file or list of BibTeX files. Org-bibtex users can
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also specify org-mode bibliography files, in which case it will
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be assumed that a BibTeX file exists with the same name and
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extension bib instead of org. If the bib file has a different
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name, use a cons cell (\"orgfile.org\" . \"bibfile.bib\") instead."
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:group 'bibtex-completion
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:type '(choice file (repeat file)))
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(defcustom bibtex-completion-library-path nil
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"A directory or list of directories in which PDFs are stored.
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Bibtex-completion assumes that the names of these PDFs are
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composed of the BibTeX-key plus a \".pdf\" suffix."
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:group 'bibtex-completion
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:type '(choice directory (repeat directory)))
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(defcustom bibtex-completion-pdf-open-function 'find-file
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"The function used for opening PDF files. This can be an
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arbitrary function that takes one argument: the path to the PDF
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file. The default is `find-file' which opens the PDF in
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Emacs (either with docview or, if installed, the much superior
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pdf-tools. When set to `helm-open-file-with-default-tool', the
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systems default viewer for PDFs is used."
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:group 'bibtex-completion
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:type 'function)
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(defcustom bibtex-completion-pdf-extension ".pdf"
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"The extension of a BibTeX entry's \"PDF\" file. This makes it
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possible to use another file type. It can also be a list of
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file types, which are then tried sequentially until a file is
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found. Beware that adding file types can reduce performance for
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large bibliographies. This variable has no effect if PDFs are
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referenced via the file field."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-find-additional-pdfs nil
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"If non-nil, all files whose base name starts with the BibTeX
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key and ends with `bibtex-completion-pdf-extension' are
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considered as PDFs, not only \"<key>.<extension>\". Note that
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for performance reasons, an entry is only marked as having a
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PDF if \"<key>.<extension\" exists."
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:group 'bibtex-completion
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:type 'boolean)
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(defcustom bibtex-completion-pdf-symbol "⌘"
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"Symbol used to indicate that a PDF file is available for a
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publication. This should be a single character."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-format-citation-functions
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'((org-mode . bibtex-completion-format-citation-ebib)
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(latex-mode . bibtex-completion-format-citation-cite)
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(markdown-mode . bibtex-completion-format-citation-pandoc-citeproc)
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(default . bibtex-completion-format-citation-default))
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"The functions used for formatting citations. The publication
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can be cited, for example, as \cite{key} or ebib:key depending on
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the major mode of the current buffer. Note that the functions
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should accept a list of keys as input. With multiple marked
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entries one can insert multiple keys at once,
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e.g. \cite{key1,key2}. See the functions
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`bibtex-completion-format-citation-ebib' and
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`bibtex-completion-format-citation-cite' as examples."
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:group 'bibtex-completion
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:type '(alist :key-type symbol :value-type function))
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(defcustom bibtex-completion-notes-path nil
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"The place where notes are stored. This is either a file, in
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which case all notes are stored in that file, or a directory, in
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which case each publication gets its own notes file in that
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directory. In the latter case, bibtex-completion assumes that the
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names of the note files are composed of the BibTeX-key plus a
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suffix that is specified in `bibtex-completion-notes-extension'."
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:group 'bibtex-completion
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:type '(choice file directory (const nil)))
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(defcustom bibtex-completion-notes-template-multiple-files
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"#+TITLE: Notes on: ${author-or-editor} (${year}): ${title}\n\n"
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"Template used to create a new note when each note is stored in a
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separate file. '${field-name}' can be used to insert the value of a
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BibTeX field into the template. Apart from the fields defined in the
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entry, one can also use the virtual fields `author-or-editor` -- which
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contains the author names if defined and otherwise the names of the
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editors -- and `author-abbrev` -- which abbreviates to 'First author
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et al.' when there are three or more authors."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-notes-template-one-file
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"\n* ${author-or-editor} (${year}): ${title}\n :PROPERTIES:\n :Custom_ID: ${=key=}\n :END:\n\n"
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"Template used to create a new note when all notes are stored
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in one file. '${field-name}' can be used to insert the value of
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a BibTeX field into the template. Apart from the fields defined in
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the entry, one can also use the virtual field `author-or-editor` -- which
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contains the author names if defined and otherwise the names of the
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editors -- and `author-abbrev` -- which abbreviates to 'First author
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et al.' when there are three or more authors."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-notes-key-pattern
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":Custom_ID: +%s\\( \\|$\\)"
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"The pattern used to find entries in the notes file. Only
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relevant when all notes are stored in one file. The key can be
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inserted into the pattern using the `format` function."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-notes-extension ".org"
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"The extension of the files containing notes. This is only
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used when `bibtex-completion-notes-path' is a directory (not a file)."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-notes-symbol "✎"
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"Symbol used to indicate that a publication has notes. This
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should be a single character."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-fallback-options
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'(("CrossRef (biblio.el)"
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. (lambda (search-expression) (biblio-lookup #'biblio-crossref-backend search-expression)))
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("arXiv (biblio.el)"
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. (lambda (search-expression) (biblio-lookup #'biblio-arxiv-backend search-expression)))
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("DBLP (computer science bibliography) (biblio.el)"
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. (lambda (search-expression) (biblio--lookup-1 #'biblio-dblp-backend search-expression)))
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("HAL (French open archive) (biblio.el)"
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. (lambda (search-expression) (biblio--lookup-1 #'biblio-hal-backend search-expression)))
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("IEEE (biblio.el)"
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. (lambda (search-expression) (biblio--lookup-1 #'biblio-ieee-backend search-expression)))
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("Google Scholar (web)"
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. "https://scholar.google.co.uk/scholar?q=%s")
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("Pubmed (web)"
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. "https://www.ncbi.nlm.nih.gov/pubmed/?term=%s")
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("Bodleian Library (web)"
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. "http://solo.bodleian.ox.ac.uk/primo_library/libweb/action/search.do?vl(freeText0)=%s&fn=search&tab=all")
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("Library of Congress (web)"
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. "https://www.loc.gov/search/?q=%s&all=true&st=list")
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("Deutsche Nationalbibliothek (web)"
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. "https://portal.dnb.de/opac.htm?query=%s")
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("British National Library (web)"
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. "http://explore.bl.uk/primo_library/libweb/action/search.do?&vl(freeText0)=%s&fn=search")
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("Bibliothèque nationale de France (web)"
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. "http://catalogue.bnf.fr/servlet/RechercheEquation?host=catalogue?historique1=Recherche+par+mots+de+la+notice&niveau1=1&url1=/jsp/recherchemots_simple.jsp?host=catalogue&maxNiveau=1&categorieRecherche=RechercheMotsSimple&NomPageJSP=/jsp/recherchemots_simple.jsp?host=catalogue&RechercheMotsSimpleAsauvegarder=0&ecranRechercheMot=/jsp/recherchemots_simple.jsp&resultatsParPage=20&x=40&y=22&nbElementsHDJ=6&nbElementsRDJ=7&nbElementsRCL=12&FondsNumerise=M&CollectionHautdejardin=TVXZROM&HDJ_DAV=R&HDJ_D2=V&HDJ_D1=T&HDJ_D3=X&HDJ_D4=Z&HDJ_SRB=O&CollectionRezdejardin=UWY1SPQM&RDJ_DAV=S&RDJ_D2=W&RDJ_D1=U&RDJ_D3=Y&RDJ_D4=1&RDJ_SRB=P&RDJ_RLR=Q&RICHELIEU_AUTRE=ABCDEEGIKLJ&RCL_D1=A&RCL_D2=K&RCL_D3=D&RCL_D4=E&RCL_D5=E&RCL_D6=C&RCL_D7=B&RCL_D8=J&RCL_D9=G&RCL_D10=I&RCL_D11=L&ARSENAL=H&LivrePeriodique=IP&partitions=C&images_fixes=F&son=S&images_animees=N&Disquette_cederoms=E&multimedia=M&cartes_plans=D&manuscrits=BT&monnaies_medailles_objets=JO&salle_spectacle=V&Monographie_TN=M&Periodique_TN=S&Recueil_TN=R&CollectionEditorial_TN=C&Ensemble_TN=E&Spectacle_TN=A&NoticeB=%s")
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("Gallica Bibliothèque Numérique (web)"
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. "http://gallica.bnf.fr/Search?q=%s"))
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"Alist of online sources that can be used to search for
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publications. The key of each entry is the name of the online
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source. The value is the URL used for retrieving results. This
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URL must contain a %s in the position where the search term
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should be inserted. Alternatively, the value can be a function
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that will be called when the entry is selected."
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:group 'bibtex-completion
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:type '(alist :key-type string
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:value-type (choice (string :tag "URL")
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(function :tag "Function"))))
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(defcustom bibtex-completion-browser-function nil
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"The browser that is used to access online resources. If
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nil (default), the value of `browse-url-browser-function' is
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used. If that value is nil, Helm uses the first available
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browser in `helm-browse-url-default-browser-alist'"
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:group 'bibtex-completion
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:type '(choice
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(const :tag "Default" :value nil)
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(function-item :tag "Emacs interface to w3m" :value w3m-browse-url)
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(function-item :tag "Emacs W3" :value browse-url-w3)
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(function-item :tag "W3 in another Emacs via `gnudoit'"
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:value browse-url-w3-gnudoit)
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(function-item :tag "Mozilla" :value browse-url-mozilla)
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(function-item :tag "Firefox" :value browse-url-firefox)
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(function-item :tag "Chromium" :value browse-url-chromium)
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(function-item :tag "Galeon" :value browse-url-galeon)
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(function-item :tag "Epiphany" :value browse-url-epiphany)
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(function-item :tag "Netscape" :value browse-url-netscape)
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(function-item :tag "eww" :value eww-browse-url)
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(function-item :tag "Mosaic" :value browse-url-mosaic)
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(function-item :tag "Mosaic using CCI" :value browse-url-cci)
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(function-item :tag "Text browser in an xterm window"
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:value browse-url-text-xterm)
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(function-item :tag "Text browser in an Emacs window"
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:value browse-url-text-emacs)
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(function-item :tag "KDE" :value browse-url-kde)
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(function-item :tag "Elinks" :value browse-url-elinks)
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(function-item :tag "Specified by `Browse Url Generic Program'"
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:value browse-url-generic)
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(function-item :tag "Default Windows browser"
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:value browse-url-default-windows-browser)
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(function-item :tag "Default Mac OS X browser"
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:value browse-url-default-macosx-browser)
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(function-item :tag "GNOME invoking Mozilla"
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:value browse-url-gnome-moz)
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(function-item :tag "Default browser"
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:value browse-url-default-browser)
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(function :tag "Your own function")
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(alist :tag "Regexp/function association list"
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:key-type regexp :value-type function)))
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(defcustom bibtex-completion-additional-search-fields nil
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"The fields that are used for searching in addition to author,
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editor, title, year, BibTeX key, and entry type."
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:group 'bibtex-completion
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:type '(repeat string))
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(defcustom bibtex-completion-no-export-fields nil
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"A list of fields that should be ignored when exporting BibTeX
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entries."
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:group 'bibtex-completion
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:type '(repeat string))
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(defcustom bibtex-completion-cite-commands '("cite" "Cite" "parencite"
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"Parencite" "footcite" "footcitetext" "textcite" "Textcite"
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"smartcite" "Smartcite" "cite*" "parencite*" "supercite" "autocite"
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"Autocite" "autocite*" "Autocite*" "citeauthor" "Citeauthor"
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"citeauthor*" "Citeauthor*" "citetitle" "citetitle*" "citeyear"
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"citeyear*" "citedate" "citedate*" "citeurl" "nocite" "fullcite"
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"footfullcite" "notecite" "Notecite" "pnotecite" "Pnotecite"
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"fnotecite")
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"The list of LaTeX cite commands. When creating LaTeX
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citations, these can be accessed as future entries in the
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minibuffer history, i.e. by pressing the arrow down key. The
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default entries are taken from biblatex. There is currently no
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special support for multicite commands and volcite et al. These
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commands can be used but bibtex-completion does not prompt for their
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extra arguments."
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:group 'bibtex-completion
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:type '(choice string (repeat string)))
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(defcustom bibtex-completion-cite-default-command "cite"
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"The LaTeX cite command that is used if the user doesn't enter
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anything when prompted for such a command."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-cite-prompt-for-optional-arguments t
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"If t, bibtex-completion prompts for pre- and postnotes for
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LaTeX cite commands. Choose nil for no prompts."
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:group 'bibtex-completion
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:type 'boolean)
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(defcustom bibtex-completion-cite-default-as-initial-input nil
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"This variable controls how the default command defined in
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`bibtex-completion-cite-default-command' is used. If t, it is inserted
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into the minibuffer before reading input from the user. If nil,
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it is used as the default if the user doesn't enter anything."
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:group 'bibtex-completion
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:type 'boolean)
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(defcustom bibtex-completion-pdf-field nil
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"The name of the BibTeX field in which the path to PDF files is
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stored or nil if no such field should be used. If an entry has
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no value for this field, or if the specified file does not exist,
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or if this variable is nil, bibtex-completion will look up the PDF in
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the directories listed in `bibtex-completion-library-path'."
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:group 'bibtex-completion
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:type 'string)
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(defcustom bibtex-completion-display-formats
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'((t . "${author:36} ${title:*} ${year:4} ${=has-pdf=:1}${=has-note=:1} ${=type=:7}"))
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"Alist of format strings for displaying entries in the results list.
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The key of each element of this list is either a BibTeX entry
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type (in which case the format string applies to entries of this
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type only) or t (in which case the format string applies to all
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other entry types). The value is the format string.
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In the format string, expressions like \"${author:36}\",
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\"${title:*}\", etc, are expanded to the value of the
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corresponding field. An expression like \"${author:N}\" is
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truncated to a width of N characters, whereas an expression like
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\"${title:*}\" is truncated to the remaining width in the results
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window. Three special fields are available: \"=type=\" holds the
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BibTeX entry type, \"=has-pdf=\" holds
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`bibtex-completion-pdf-symbol' if the entry has a PDF file, and
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\"=has-notes=\" holds `bibtex-completion-notes-symbol' if the
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entry has a notes file. The \"author\" field is expanded to
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either the author names or, if the entry has no author field, the
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editor names."
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:group 'bibtex-completion
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:type '(alist :key-type symbol :value-type string))
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(defvar bibtex-completion-cross-referenced-entry-types
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'("proceedings" "mvproceedings" "book" "mvbook" "collection" "mvcollection")
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"The list of potentially cross-referenced entry types (in
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lowercase). Only entries of these types are checked in
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order to resolve cross-references. The default list is usually
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sufficient; adding more types can slow down resolution for
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large biblioraphies.")
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(defvar bibtex-completion-display-formats-internal nil
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"Stores `bibtex-completion-display-formats' together with the
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\"used width\" of each format string. This is set internally.")
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(defvar bibtex-completion-cache nil
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"A cache storing the hash of the bibliography content and the
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corresponding list of entries, for each bibliography file,
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obtained when the bibliography was last parsed. When the
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current bibliography hash is identical to the cached hash, the
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cached list of candidates is reused, otherwise the bibliography
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file is reparsed.")
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(defvar bibtex-completion-string-cache nil
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"A cache storing bibtex strings, for each bibliography file, obtained when the bibliography was last parsed.")
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(defvar bibtex-completion-string-hash-table nil
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"A hash table used for string replacements.")
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(defun bibtex-completion-normalize-bibliography (&optional type)
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"Returns a list of bibliography file(s) in
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`bibtex-completion-bibliography'. If there are org-mode
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bibliography-files, their corresponding bibtex files are listed
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as well, unless TYPE is 'main. If TYPE is 'bibtex, org-mode
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bibliography-files are instead replaced with their associated
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bibtex files."
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(delete-dups
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(cl-loop
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for bib-file in (-flatten (list bibtex-completion-bibliography))
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for main-file = (if (consp bib-file)
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(car bib-file)
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bib-file)
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for bibtex-file = (if (consp bib-file)
|
|
(cdr bib-file)
|
|
(concat (file-name-sans-extension main-file) ".bib"))
|
|
unless (equal type 'bibtex)
|
|
collect main-file
|
|
unless (equal type 'main)
|
|
collect bibtex-file)))
|
|
|
|
(defvar bibtex-completion-file-watch-descriptors nil
|
|
"List of file watches monitoring bibliography files for changes.")
|
|
|
|
(defun bibtex-completion-init ()
|
|
"Checks that the files and directories specified by the user
|
|
actually exist. Also sets `bibtex-completion-display-formats-internal'."
|
|
|
|
;; Remove current watch-descriptors for bibliography files:
|
|
(mapc (lambda (watch-descriptor)
|
|
(file-notify-rm-watch watch-descriptor))
|
|
bibtex-completion-file-watch-descriptors)
|
|
(setq bibtex-completion-file-watch-descriptors nil)
|
|
|
|
;; Check that all specified bibliography files exist and add file
|
|
;; watches for automatic reloading of the bibliography when a file
|
|
;; is changed:
|
|
(mapc (lambda (file)
|
|
(if (f-file? file)
|
|
(let ((watch-descriptor
|
|
(file-notify-add-watch file
|
|
'(change)
|
|
(lambda (event) (bibtex-completion-candidates)))))
|
|
(setq bibtex-completion-file-watch-descriptors
|
|
(cons watch-descriptor bibtex-completion-file-watch-descriptors)))
|
|
(user-error "Bibliography file %s could not be found." file)))
|
|
(bibtex-completion-normalize-bibliography))
|
|
|
|
;; Pre-calculate minimal widths needed by the format strings for
|
|
;; various entry types:
|
|
(setq bibtex-completion-display-formats-internal
|
|
(mapcar (lambda (format)
|
|
(let* ((format-string (cdr format))
|
|
(fields-width 0)
|
|
(string-width
|
|
(length
|
|
(s-format format-string
|
|
(lambda (field)
|
|
(setq fields-width
|
|
(+ fields-width
|
|
(string-to-number
|
|
(or (cadr (split-string field ":"))
|
|
""))))
|
|
"")))))
|
|
(-cons* (car format) format-string (+ fields-width string-width))))
|
|
bibtex-completion-display-formats)))
|
|
|
|
(defun bibtex-completion-clear-cache (&optional files)
|
|
"Clears FILES from cache. If FILES is omitted, all files in `bibtex-completion-biblography' are cleared."
|
|
(setq bibtex-completion-cache
|
|
(cl-remove-if
|
|
(lambda (x)
|
|
(member (car x)
|
|
(or files
|
|
(bibtex-completion-normalize-bibliography 'bibtex))))
|
|
bibtex-completion-cache)))
|
|
|
|
(defun bibtex-completion-clear-string-cache (&optional files)
|
|
"Clears FILES from cache. If FILES is omitted, all files in `bibtex-completion-bibliography' are cleared."
|
|
(setq bibtex-completion-string-cache
|
|
(cl-remove-if
|
|
(lambda (x)
|
|
(member (car x)
|
|
(or files
|
|
(-flatten (list bibtex-completion-bibliography)))))
|
|
bibtex-completion-string-cache)))
|
|
|
|
(defun bibtex-completion-parse-strings (&optional ht-strings)
|
|
"Parse the BibTeX strings listed in the current buffer and
|
|
return a list of entries in the order in which they appeared in
|
|
the BibTeX file.
|
|
|
|
If HT-STRINGS is provided it is assumed to be a hash table used
|
|
for string replacement."
|
|
(goto-char (point-min))
|
|
(let ((strings (cl-loop
|
|
with ht = (if ht-strings ht-strings (make-hash-table :test #'equal))
|
|
for entry-type = (parsebib-find-next-item)
|
|
while entry-type
|
|
if (string= (downcase entry-type) "string")
|
|
collect (let ((entry (parsebib-read-string (point) ht)))
|
|
(puthash (car entry) (cdr entry) ht)
|
|
entry)
|
|
)))
|
|
(-filter (lambda (x) x) strings)))
|
|
|
|
(defun bibtex-completion-update-strings-ht (ht strings)
|
|
(cl-loop
|
|
for entry in strings
|
|
do (puthash (car entry) (cdr entry) ht)))
|
|
|
|
(defvar bibtex-completion-cached-notes-keys nil
|
|
"A cache storing notes keys obtained when the bibliography was last parsed.")
|
|
|
|
(defun bibtex-completion-candidates ()
|
|
"Reads the BibTeX files and returns a list of conses, one for
|
|
each entry. The first element of these conses is a string
|
|
containing authors, editors, title, year, type, and key of the
|
|
entry. This is string is used for matching. The second element
|
|
is the entry (only the fields listed above) as an alist."
|
|
(let ((files (nreverse (bibtex-completion-normalize-bibliography 'bibtex)))
|
|
(ht-strings (make-hash-table :test #'equal))
|
|
reparsed-files)
|
|
|
|
;; Open each bibliography file in a temporary buffer,
|
|
;; check hash of bibliography and mark for reparsing if necessary:
|
|
|
|
(cl-loop
|
|
for file in files
|
|
do
|
|
(with-temp-buffer
|
|
(insert-file-contents file)
|
|
(let ((bibliography-hash (secure-hash 'sha256 (current-buffer))))
|
|
(unless (string= (cadr (assoc file bibtex-completion-cache))
|
|
bibliography-hash)
|
|
;; Mark file as reparsed.
|
|
;; This will be useful to resolve cross-references:
|
|
(push file reparsed-files)))))
|
|
|
|
(when (and bibtex-completion-notes-path
|
|
(f-file? bibtex-completion-notes-path))
|
|
(require 'org-element)
|
|
(with-temp-buffer
|
|
(org-mode) ;; need this to avoid error in emacs 25.3.1
|
|
(insert-file-contents bibtex-completion-notes-path)
|
|
(setq bibtex-completion-cached-notes-keys
|
|
(let ((tree (org-element-parse-buffer 'headline)))
|
|
(org-element-map tree 'headline
|
|
(lambda (key) (org-element-property :CUSTOM_ID key)))))))
|
|
|
|
;; reparse if necessary
|
|
|
|
(when reparsed-files
|
|
(cl-loop
|
|
for file in files
|
|
do
|
|
(with-temp-buffer
|
|
(insert-file-contents file)
|
|
(let ((bibliography-hash (secure-hash 'sha256 (current-buffer))))
|
|
(if (not (member file reparsed-files))
|
|
(bibtex-completion-update-strings-ht ht-strings
|
|
(cddr (assoc file bibtex-completion-string-cache)))
|
|
(progn
|
|
(message "Parsing bibliography file %s ..." file)
|
|
(bibtex-completion-clear-string-cache (list file))
|
|
(push (-cons* file
|
|
bibliography-hash
|
|
(bibtex-completion-parse-strings ht-strings))
|
|
bibtex-completion-string-cache)
|
|
|
|
(bibtex-completion-clear-cache (list file))
|
|
(push (-cons* file
|
|
bibliography-hash
|
|
(bibtex-completion-parse-bibliography ht-strings))
|
|
bibtex-completion-cache))))))
|
|
(setf bibtex-completion-string-hash-table ht-strings))
|
|
|
|
;; If some files were reparsed, resolve cross-references:
|
|
(when reparsed-files
|
|
(message "Resolving cross-references ...")
|
|
(bibtex-completion-resolve-crossrefs files reparsed-files))
|
|
|
|
;; Finally return the list of candidates:
|
|
(message "Done (re)loading bibliography.")
|
|
(nreverse
|
|
(cl-loop
|
|
for file in files
|
|
append (cddr (assoc file bibtex-completion-cache))))))
|
|
|
|
(defun bibtex-completion-resolve-crossrefs (files reparsed-files)
|
|
"Expand all entries with fields from cross-referenced entries
|
|
in FILES, assuming that only those files in REPARSED-FILES were
|
|
reparsed whereas the other files in FILES were up-to-date."
|
|
(cl-loop
|
|
with entry-hash = (bibtex-completion-make-entry-hash files reparsed-files)
|
|
for file in files
|
|
for entries = (cddr (assoc file bibtex-completion-cache))
|
|
if (member file reparsed-files)
|
|
;; The file was reparsed.
|
|
;; Resolve crossrefs then make candidates for all entries:
|
|
do (setf
|
|
(cddr (assoc file bibtex-completion-cache))
|
|
(cl-loop
|
|
for entry in entries
|
|
;; Entries are alists of \(FIELD . VALUE\) pairs.
|
|
for crossref = (bibtex-completion-get-value "crossref" entry)
|
|
collect (bibtex-completion-make-candidate
|
|
(if crossref
|
|
(bibtex-completion-remove-duplicated-fields
|
|
;; Insert an empty field so we can discard the crossref info if needed:
|
|
(append entry
|
|
(cl-acons "" ""
|
|
(gethash (downcase crossref) entry-hash))))
|
|
entry))))
|
|
else
|
|
;; The file was not reparsed.
|
|
;; Resolve crossrefs then make candidates for the entries with a crossref field:
|
|
do (setf
|
|
(cddr (assoc file bibtex-completion-cache))
|
|
(cl-loop
|
|
for entry in entries
|
|
;; Entries are \(STRING . ALIST\) conses.
|
|
for entry-alist = (cdr entry)
|
|
for crossref = (bibtex-completion-get-value "crossref" entry-alist)
|
|
collect (if crossref
|
|
(bibtex-completion-make-candidate
|
|
(bibtex-completion-remove-duplicated-fields
|
|
;; Discard crossref info and resolve crossref again:
|
|
(append (--take-while (> (length (car it)) 0) entry-alist)
|
|
(cl-acons "" ""
|
|
(gethash (downcase crossref) entry-hash)))))
|
|
entry)))))
|
|
|
|
(defun bibtex-completion-make-entry-hash (files reparsed-files)
|
|
"Return a hash table of all potentially cross-referenced bibliography entries in FILES,
|
|
assuming that only those files in REPARSED-FILES were reparsed
|
|
whereas the other files in FILES were up-to-date. Only entries
|
|
whose type belongs to
|
|
`bibtex-completion-cross-referenced-entry-types' are included in
|
|
the hash table."
|
|
(cl-loop
|
|
with entries =
|
|
(cl-loop
|
|
for file in files
|
|
for entries = (cddr (assoc file bibtex-completion-cache))
|
|
if (member file reparsed-files)
|
|
;; Entries are alists of \(FIELD . VALUE\) pairs.
|
|
append entries
|
|
;; Entries are \(STRING . ALIST\) conses.
|
|
else
|
|
append (mapcar 'cdr entries))
|
|
with ht = (make-hash-table :test #'equal :size (length entries))
|
|
for entry in entries
|
|
for key = (bibtex-completion-get-value "=key=" entry)
|
|
if (member (downcase (bibtex-completion-get-value "=type=" entry))
|
|
bibtex-completion-cross-referenced-entry-types)
|
|
do (puthash (downcase key) entry ht)
|
|
finally return ht))
|
|
|
|
(defun bibtex-completion-make-candidate (entry)
|
|
"Return a candidate for ENTRY."
|
|
(cons (bibtex-completion-clean-string
|
|
(s-join " " (-map #'cdr entry)))
|
|
entry))
|
|
|
|
(defun bibtex-completion-parse-bibliography (&optional ht-strings)
|
|
"Parse the BibTeX entries listed in the current buffer and
|
|
return a list of entries in the order in which they appeared in
|
|
the BibTeX file. Also do some preprocessing of the entries.
|
|
|
|
If HT-STRINGS is provided it is assumed to be a hash table."
|
|
(goto-char (point-min))
|
|
(cl-loop
|
|
with fields = (append '("title" "crossref")
|
|
(-map (lambda (it) (if (symbolp it) (symbol-name it) it))
|
|
bibtex-completion-additional-search-fields))
|
|
for entry-type = (parsebib-find-next-item)
|
|
while entry-type
|
|
unless (member-ignore-case entry-type '("preamble" "string" "comment"))
|
|
collect (let* ((entry (parsebib-read-entry entry-type (point) ht-strings))
|
|
(fields (append
|
|
(list (if (assoc-string "author" entry 'case-fold)
|
|
"author"
|
|
"editor")
|
|
(if (assoc-string "date" entry 'case-fold)
|
|
"date"
|
|
"year"))
|
|
fields)))
|
|
(-map (lambda (it)
|
|
(cons (downcase (car it)) (cdr it)))
|
|
(bibtex-completion-prepare-entry entry fields)))))
|
|
|
|
(defun bibtex-completion-get-entry (entry-key)
|
|
"Given a BibTeX key this function scans all bibliographies
|
|
listed in `bibtex-completion-bibliography' and returns an alist of the
|
|
record with that key. Fields from crossreferenced entries are
|
|
appended to the requested entry."
|
|
(let* ((entry (bibtex-completion-get-entry1 entry-key))
|
|
(crossref (bibtex-completion-get-value "crossref" entry))
|
|
(crossref (when crossref (bibtex-completion-get-entry1 crossref))))
|
|
(bibtex-completion-remove-duplicated-fields (append entry crossref))))
|
|
|
|
(defun bibtex-completion-get-entry1 (entry-key &optional do-not-find-pdf)
|
|
(let ((bib (bibtex-completion-normalize-bibliography 'bibtex)))
|
|
(with-temp-buffer
|
|
(mapc #'insert-file-contents bib)
|
|
(goto-char (point-min))
|
|
(if (re-search-forward (concat "^[ \t]*@\\(" parsebib--bibtex-identifier
|
|
"\\)[[:space:]]*[\(\{][[:space:]]*"
|
|
(regexp-quote entry-key) "[[:space:]]*,")
|
|
nil t)
|
|
(let ((entry-type (match-string 1)))
|
|
(reverse (bibtex-completion-prepare-entry
|
|
(parsebib-read-entry entry-type (point) bibtex-completion-string-hash-table) nil do-not-find-pdf)))
|
|
(progn
|
|
(display-warning :warning (concat "Bibtex-completion couldn't find entry with key \"" entry-key "\"."))
|
|
nil)))))
|
|
|
|
(defun bibtex-completion-find-pdf-in-field (key-or-entry)
|
|
"Returns the path of the PDF specified in the field
|
|
`bibtex-completion-pdf-field' if that file exists. Returns nil if no
|
|
file is specified, or if the specified file does not exist, or if
|
|
`bibtex-completion-pdf-field' is nil."
|
|
(when bibtex-completion-pdf-field
|
|
(let* ((entry (if (stringp key-or-entry)
|
|
(bibtex-completion-get-entry1 key-or-entry t)
|
|
key-or-entry))
|
|
(value (bibtex-completion-get-value bibtex-completion-pdf-field entry)))
|
|
(cond
|
|
((not value) nil) ; Field not defined.
|
|
((f-file? value) (list value)) ; A bare full path was found.
|
|
((-any 'f-file? (--map (f-join it (f-filename value)) (-flatten bibtex-completion-library-path))) (-filter 'f-file? (--map (f-join it (f-filename value)) (-flatten bibtex-completion-library-path))))
|
|
(t ; Zotero/Mendeley/JabRef format:
|
|
(let ((value (replace-regexp-in-string "\\([^\\]\\);" "\\1\^^" value)))
|
|
(cl-loop ; Looping over the files:
|
|
for record in (s-split "\^^" value)
|
|
; Replace unescaped colons by field separator:
|
|
for record = (replace-regexp-in-string "\\([^\\]\\|^\\):" "\\1\^_" record)
|
|
; Unescape stuff:
|
|
for record = (replace-regexp-in-string "\\\\\\(.\\)" "\\1" record)
|
|
; Now we can safely split:
|
|
for record = (s-split "\^_" record)
|
|
for file-name = (nth 0 record)
|
|
for path = (or (nth 1 record) "")
|
|
for paths = (if (s-match "^[A-Z]:" path)
|
|
(list path) ; Absolute Windows path
|
|
; Something else:
|
|
(append
|
|
(list
|
|
path
|
|
file-name
|
|
(f-join (f-root) path) ; Mendeley #105
|
|
(f-join (f-root) path file-name)) ; Mendeley #105
|
|
(--map (f-join it path)
|
|
(-flatten bibtex-completion-library-path)) ; Jabref #100
|
|
(--map (f-join it path file-name)
|
|
(-flatten bibtex-completion-library-path)))) ; Jabref #100
|
|
for result = (-first (lambda (path)
|
|
(if (and (not (s-blank-str? path))
|
|
(f-exists? path))
|
|
path nil)) paths)
|
|
if result collect result)))))))
|
|
|
|
|
|
(defun bibtex-completion-find-pdf-in-library (key-or-entry &optional find-additional)
|
|
"Searches the directories in `bibtex-completion-library-path'
|
|
for a PDF whose name is composed of the BibTeX key plus
|
|
`bibtex-completion-pdf-extension'. The path of the first matching
|
|
PDF is returned.
|
|
|
|
If FIND-ADDITIONAL is non-nil, the paths of all PDFs whose name
|
|
starts with the BibTeX key and ends with
|
|
`bibtex-completion-pdf-extension' are returned instead."
|
|
(let* ((key (if (stringp key-or-entry)
|
|
key-or-entry
|
|
(bibtex-completion-get-value "=key=" key-or-entry)))
|
|
(main-pdf (cl-loop
|
|
for dir in (-flatten bibtex-completion-library-path)
|
|
append (cl-loop
|
|
for ext in (-flatten bibtex-completion-pdf-extension)
|
|
collect (f-join dir (s-concat key ext))))))
|
|
(if find-additional
|
|
(sort ; move main pdf on top of the list if needed
|
|
(cl-loop
|
|
for dir in (-flatten bibtex-completion-library-path)
|
|
append (directory-files dir t
|
|
(s-concat "^" (regexp-quote key)
|
|
".*\\("
|
|
(mapconcat 'regexp-quote
|
|
(-flatten bibtex-completion-pdf-extension)
|
|
"\\|")
|
|
"\\)$")))
|
|
(lambda (x y)
|
|
(and (member x main-pdf)
|
|
(not (member y main-pdf)))))
|
|
(-flatten (-first 'f-file? main-pdf)))))
|
|
|
|
(defun bibtex-completion-find-pdf (key-or-entry &optional find-additional)
|
|
"Returns the path of the PDF associated with the specified
|
|
entry. This is either the path(s) specified in the field
|
|
`bibtex-completion-pdf-field' or, if that does not exist, the
|
|
first PDF in any of the directories in
|
|
`bibtex-completion-library-path' whose name is composed of the
|
|
the BibTeX key plus `bibtex-completion-pdf-extension' (or if
|
|
FIND-ADDITIONAL is non-nil, all PDFs in
|
|
`bibtex-completion-library-path' whose name starts with the
|
|
BibTeX key and ends with `bibtex-completion-pdf-extension').
|
|
Returns nil if no PDF is found."
|
|
(or (bibtex-completion-find-pdf-in-field key-or-entry)
|
|
(bibtex-completion-find-pdf-in-library key-or-entry find-additional)))
|
|
|
|
(defun bibtex-completion-prepare-entry (entry &optional fields do-not-find-pdf)
|
|
"Prepare ENTRY for display.
|
|
ENTRY is an alist representing an entry as returned by
|
|
parsebib-read-entry. All the fields not in FIELDS are removed
|
|
from ENTRY, with the exception of the \"=type=\" and \"=key=\"
|
|
fields. If FIELDS is empty, all fields are kept. Also add a
|
|
=has-pdf= and/or =has-note= field, if they exist for ENTRY. If
|
|
DO-NOT-FIND-PDF is non-nil, this function does not attempt to
|
|
find a PDF file."
|
|
(when entry ; entry may be nil, in which case just return nil
|
|
(let* ((fields (when fields (append fields (list "=type=" "=key=" "=has-pdf=" "=has-note="))))
|
|
; Check for PDF:
|
|
(entry (if (and (not do-not-find-pdf) (bibtex-completion-find-pdf entry))
|
|
(cons (cons "=has-pdf=" bibtex-completion-pdf-symbol) entry)
|
|
entry))
|
|
(entry-key (cdr (assoc "=key=" entry)))
|
|
; Check for notes:
|
|
(entry (if (or
|
|
;; One note file per entry:
|
|
(and bibtex-completion-notes-path
|
|
(f-directory? bibtex-completion-notes-path)
|
|
(f-file? (f-join bibtex-completion-notes-path
|
|
(s-concat entry-key
|
|
bibtex-completion-notes-extension))))
|
|
;; All notes in one file:
|
|
(and bibtex-completion-notes-path
|
|
(f-file? bibtex-completion-notes-path)
|
|
(member entry-key bibtex-completion-cached-notes-keys)))
|
|
(cons (cons "=has-note=" bibtex-completion-notes-symbol) entry)
|
|
entry))
|
|
; Remove unwanted fields:
|
|
(entry (if fields
|
|
(--filter (member-ignore-case (car it) fields) entry)
|
|
entry)))
|
|
;; Normalize case of entry type:
|
|
(setcdr (assoc "=type=" entry) (downcase (cdr (assoc "=type=" entry))))
|
|
;; Remove duplicated fields:
|
|
(bibtex-completion-remove-duplicated-fields entry))))
|
|
|
|
(defun bibtex-completion-remove-duplicated-fields (entry)
|
|
"Remove duplicated fields from ENTRY."
|
|
(cl-remove-duplicates entry
|
|
:test (lambda (x y) (string= (s-downcase x) (s-downcase y)))
|
|
:key 'car :from-end t))
|
|
|
|
|
|
(defun bibtex-completion-format-entry (entry width)
|
|
"Formats a BibTeX ENTRY for display in results list. WIDTH is
|
|
the width of the results list. The display format is governed by
|
|
the variable `bibtex-completion-display-formats'."
|
|
(let* ((format
|
|
(or (assoc-string (bibtex-completion-get-value "=type=" entry)
|
|
bibtex-completion-display-formats-internal
|
|
'case-fold)
|
|
(assoc t bibtex-completion-display-formats-internal)))
|
|
(format-string (cadr format)))
|
|
(s-format
|
|
format-string
|
|
(lambda (field)
|
|
(let* ((field (split-string field ":"))
|
|
(field-name (car field))
|
|
(field-width (cadr field))
|
|
(field-value (bibtex-completion-get-value field-name entry)))
|
|
(when (and (string= field-name "author")
|
|
(not field-value))
|
|
(setq field-value (bibtex-completion-get-value "editor" entry)))
|
|
(when (and (string= field-name "year")
|
|
(not field-value))
|
|
(setq field-value (car (split-string (bibtex-completion-get-value "date" entry "") "-"))))
|
|
(setq field-value (bibtex-completion-clean-string (or field-value " ")))
|
|
(when (member field-name '("author" "editor"))
|
|
(setq field-value (bibtex-completion-shorten-authors field-value)))
|
|
(if (not field-width)
|
|
field-value
|
|
(setq field-width (string-to-number field-width))
|
|
(truncate-string-to-width
|
|
field-value
|
|
(if (> field-width 0)
|
|
field-width
|
|
(- width (cddr format)))
|
|
0 ?\s)))))))
|
|
|
|
|
|
(defun bibtex-completion-clean-string (s)
|
|
"Removes quoting and superfluous white space from BibTeX field
|
|
values."
|
|
(if s (replace-regexp-in-string "[\n\t ]+" " "
|
|
(replace-regexp-in-string "[\"{}]+" "" s))
|
|
nil))
|
|
|
|
(defun bibtex-completion-shorten-authors (authors)
|
|
"Returns a comma-separated list of the surnames in authors."
|
|
(if authors
|
|
(cl-loop for a in (s-split " and " authors)
|
|
for p = (s-split "," a t)
|
|
for sep = "" then ", "
|
|
concat sep
|
|
if (eq 1 (length p))
|
|
concat (-last-item (s-split " +" (car p) t))
|
|
else
|
|
concat (car p))
|
|
nil))
|
|
|
|
|
|
(defun bibtex-completion-open-pdf (keys &optional fallback-action)
|
|
"Open the PDFs associated with the marked entries using the
|
|
function specified in `bibtex-completion-pdf-open-function'.
|
|
If multiple PDFs are found for an entry, ask for the one to
|
|
open using `completion-read'. If FALLBACK-ACTION is non-nil, it is called in
|
|
case no PDF is found."
|
|
(dolist (key keys)
|
|
(let ((pdf (bibtex-completion-find-pdf key bibtex-completion-find-additional-pdfs)))
|
|
(cond
|
|
((> (length pdf) 1)
|
|
(let* ((pdf (f-uniquify-alist pdf))
|
|
(choice (completing-read "File to open: " (mapcar 'cdr pdf) nil t))
|
|
(file (car (rassoc choice pdf))))
|
|
(funcall bibtex-completion-pdf-open-function file)))
|
|
(pdf
|
|
(funcall bibtex-completion-pdf-open-function (car pdf)))
|
|
(fallback-action
|
|
(funcall fallback-action (list key)))
|
|
(t
|
|
(message "No PDF(s) found for this entry: %s"
|
|
key))))))
|
|
|
|
(defun bibtex-completion-open-url-or-doi (keys)
|
|
"Open the associated URL or DOI in a browser."
|
|
(dolist (key keys)
|
|
(let* ((entry (bibtex-completion-get-entry key))
|
|
(url (bibtex-completion-get-value "url" entry))
|
|
(doi (bibtex-completion-get-value "doi" entry))
|
|
(browse-url-browser-function
|
|
(or bibtex-completion-browser-function
|
|
browse-url-browser-function)))
|
|
(if url
|
|
(browse-url url)
|
|
(if doi (browse-url
|
|
(s-concat "http://dx.doi.org/" doi))
|
|
(message "No URL or DOI found for this entry: %s"
|
|
key))))))
|
|
|
|
(defun bibtex-completion-open-any (keys)
|
|
"Open the PDFs associated with the marked entries using the
|
|
function specified in `bibtex-completion-pdf-open-function'.
|
|
If multiple PDFs are found for an entry, ask for the one to
|
|
open using `completion-read'. If no PDF is found, try to open a URL
|
|
or DOI in the browser instead."
|
|
(bibtex-completion-open-pdf keys 'bibtex-completion-open-url-or-doi))
|
|
|
|
(defun bibtex-completion-format-citation-default (keys)
|
|
"Default formatter for keys, separates multiple keys with commas."
|
|
(s-join ", " keys))
|
|
|
|
(defvar bibtex-completion-cite-command-history nil
|
|
"History list for LaTeX citation commands.")
|
|
|
|
(defun bibtex-completion-format-citation-cite (keys)
|
|
"Formatter for LaTeX citation commands. Prompts for the command
|
|
and for arguments if the commands can take any. If point is
|
|
inside or just after a citation command, only adds KEYS to it."
|
|
(let (macro)
|
|
(cond
|
|
((and (require 'reftex-parse nil t)
|
|
(setq macro (reftex-what-macro 1))
|
|
(stringp (car macro))
|
|
(string-match "\\`\\\\cite\\|cite\\'" (car macro)))
|
|
;; We are inside a cite macro. Insert key at point, with appropriate delimiters.
|
|
(delete-horizontal-space)
|
|
(concat (pcase (preceding-char)
|
|
(?\{ "")
|
|
(?, " ")
|
|
(_ ", "))
|
|
(s-join ", " keys)
|
|
(if (member (following-char) '(?\} ?,))
|
|
""
|
|
", ")))
|
|
((and (equal (preceding-char) ?\})
|
|
(require 'reftex-parse nil t)
|
|
(save-excursion
|
|
(forward-char -1)
|
|
(setq macro (reftex-what-macro 1)))
|
|
(stringp (car macro))
|
|
(string-match "\\`\\\\cite\\|cite\\'" (car macro)))
|
|
;; We are right after a cite macro. Append key and leave point at the end.
|
|
(delete-char -1)
|
|
(delete-horizontal-space t)
|
|
(concat (pcase (preceding-char)
|
|
(?\{ "")
|
|
(?, " ")
|
|
(_ ", "))
|
|
(s-join ", " keys)
|
|
"}"))
|
|
(t
|
|
;; We are not inside or right after a cite macro. Insert a full citation.
|
|
(let* ((initial (when bibtex-completion-cite-default-as-initial-input
|
|
bibtex-completion-cite-default-command))
|
|
(default (unless bibtex-completion-cite-default-as-initial-input
|
|
bibtex-completion-cite-default-command))
|
|
(default-info (if default (format " (default \"%s\")" default) ""))
|
|
(cite-command (completing-read
|
|
(format "Cite command%s: " default-info)
|
|
bibtex-completion-cite-commands nil nil initial
|
|
'bibtex-completion-cite-command-history default nil)))
|
|
(if (member cite-command '("nocite" "supercite")) ; These don't want arguments.
|
|
(format "\\%s{%s}" cite-command (s-join ", " keys))
|
|
(let ((prenote (if bibtex-completion-cite-prompt-for-optional-arguments
|
|
(read-from-minibuffer "Prenote: ")
|
|
""))
|
|
(postnote (if bibtex-completion-cite-prompt-for-optional-arguments
|
|
(read-from-minibuffer "Postnote: ")
|
|
"")))
|
|
(cond ((not (string= "" prenote))
|
|
(format "\\%s[%s][%s]{%s}" cite-command prenote postnote (s-join ", " keys)))
|
|
((not (string= "" postnote))
|
|
(format "\\%s[%s]{%s}" cite-command postnote (s-join ", " keys)))
|
|
(t
|
|
(format "\\%s{%s}" cite-command (s-join ", " keys)))))))))))
|
|
|
|
(defun bibtex-completion-format-citation-pandoc-citeproc (keys)
|
|
"Formatter for pandoc-citeproc citations."
|
|
(let* ((prenote (if bibtex-completion-cite-prompt-for-optional-arguments (read-from-minibuffer "Prenote: ") ""))
|
|
(postnote (if bibtex-completion-cite-prompt-for-optional-arguments (read-from-minibuffer "Postnote: ") ""))
|
|
(prenote (if (string= "" prenote) "" (concat prenote " ")))
|
|
(postnote (if (string= "" postnote) "" (concat ", " postnote))))
|
|
(format "[%s%s%s]" prenote (s-join "; " (--map (concat "@" it) keys)) postnote)))
|
|
|
|
(defun bibtex-completion-format-citation-ebib (keys)
|
|
"Formatter for ebib references."
|
|
(s-join ", "
|
|
(--map (format "ebib:%s" it) keys)))
|
|
|
|
(defun bibtex-completion-format-citation-org-link-to-PDF (keys)
|
|
"Formatter for org-links to PDF. Uses first matching PDF if
|
|
several are available. Entries for which no PDF is available are
|
|
omitted."
|
|
(s-join ", " (cl-loop
|
|
for key in keys
|
|
for pdfs = (bibtex-completion-find-pdf key bibtex-completion-find-additional-pdfs)
|
|
append (--map (format "[[%s][%s]]" it key) pdfs))))
|
|
|
|
(defun bibtex-completion-format-citation-org-apa-link-to-PDF (keys)
|
|
"Formatter for org-links to PDF. Link text loosely follows APA
|
|
format. Uses first matching PDF if several are available."
|
|
(s-join ", " (cl-loop
|
|
for key in keys
|
|
for entry = (bibtex-completion-get-entry key)
|
|
for author = (bibtex-completion-shorten-authors
|
|
(or (bibtex-completion-get-value "author" entry)
|
|
(bibtex-completion-get-value "editor" entry)))
|
|
for year = (or (bibtex-completion-get-value "year" entry)
|
|
(car (split-string (bibtex-completion-get-value "date" entry "") "-")))
|
|
for pdf = (car (bibtex-completion-find-pdf key))
|
|
if pdf
|
|
collect (format "[[file:%s][%s (%s)]]" pdf author year)
|
|
else
|
|
collect (format "%s (%s)" author year))))
|
|
|
|
;; When you want to create a todo list about reading, I think using
|
|
;; PDF's title is more intuitive.
|
|
(defun bibtex-completion-format-citation-org-title-link-to-PDF (keys)
|
|
"Formatter for org-links to PDF. Link text follows file title format.
|
|
Uses first matching PDF if several are available."
|
|
(s-join ", " (cl-loop
|
|
for key in keys
|
|
for entry = (bibtex-completion-get-entry key)
|
|
for title = (bibtex-completion-get-value "title" entry)
|
|
for pdf = (or (car (bibtex-completion-find-pdf key))
|
|
(bibtex-completion-get-value "url" entry))
|
|
if pdf
|
|
collect (format "[[file:%s][%s]]" pdf title)
|
|
else
|
|
collect (format "%s" title))))
|
|
|
|
(defun bibtex-completion-insert-citation (keys)
|
|
"Insert citation at point. The format depends on
|
|
`bibtex-completion-format-citation-functions'."
|
|
(let ((format-function
|
|
(cdr (or (assoc major-mode bibtex-completion-format-citation-functions)
|
|
(assoc 'default bibtex-completion-format-citation-functions)))))
|
|
(insert
|
|
(funcall format-function keys))))
|
|
|
|
(defun bibtex-completion-insert-reference (keys)
|
|
"Insert a reference for each selected entry."
|
|
(let* ((refs (--map
|
|
(s-word-wrap fill-column
|
|
(concat "\n- " (bibtex-completion-apa-format-reference it)))
|
|
keys)))
|
|
(insert "\n" (s-join "\n" refs) "\n")))
|
|
|
|
(defun bibtex-completion-apa-format-reference (key)
|
|
"Returns a plain text reference in APA format for the
|
|
publication specified by KEY."
|
|
(let*
|
|
((entry (bibtex-completion-get-entry key))
|
|
(ref (pcase (downcase (bibtex-completion-get-value "=type=" entry))
|
|
("article"
|
|
(s-format
|
|
"${author} (${year}). ${title}. ${journal}, ${volume}(${number}), ${pages}.${doi}"
|
|
'bibtex-completion-apa-get-value entry))
|
|
("inproceedings"
|
|
(s-format
|
|
"${author} (${year}). ${title}. In ${editor}, ${booktitle} (pp. ${pages}). ${address}: ${publisher}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("book"
|
|
(s-format
|
|
"${author} (${year}). ${title}. ${address}: ${publisher}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("phdthesis"
|
|
(s-format
|
|
"${author} (${year}). ${title} (Doctoral dissertation). ${school}, ${address}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("inbook"
|
|
(s-format
|
|
"${author} (${year}). ${title}. In ${editor} (Eds.), ${booktitle} (pp. ${pages}). ${address}: ${publisher}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("incollection"
|
|
(s-format
|
|
"${author} (${year}). ${title}. In ${editor} (Eds.), ${booktitle} (pp. ${pages}). ${address}: ${publisher}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("proceedings"
|
|
(s-format
|
|
"${editor} (Eds.). (${year}). ${booktitle}. ${address}: ${publisher}."
|
|
'bibtex-completion-apa-get-value entry))
|
|
("unpublished"
|
|
(s-format
|
|
"${author} (${year}). ${title}. Unpublished manuscript."
|
|
'bibtex-completion-apa-get-value entry))
|
|
(_
|
|
(s-format
|
|
"${author} (${year}). ${title}."
|
|
'bibtex-completion-apa-get-value entry)))))
|
|
(replace-regexp-in-string "\\([.?!]\\)\\." "\\1" ref))) ; Avoid sequences of punctuation marks.
|
|
|
|
(defun bibtex-completion-apa-get-value (field entry &optional default)
|
|
"Return FIELD or ENTRY formatted following the APA
|
|
guidelines. Return DEFAULT if FIELD is not present in ENTRY."
|
|
;; Virtual fields:
|
|
(cond
|
|
((string= field "author-or-editor")
|
|
(let ((value (bibtex-completion-get-value "author" entry)))
|
|
(if value
|
|
(bibtex-completion-apa-format-authors value)
|
|
(bibtex-completion-apa-format-editors
|
|
(bibtex-completion-get-value "editor" entry)))))
|
|
((string= field "author-abbrev")
|
|
(let ((value (bibtex-completion-get-value "author" entry)))
|
|
(bibtex-completion-apa-format-authors-abbrev value)))
|
|
(t
|
|
;; Real fields:
|
|
(let ((value (bibtex-completion-get-value field entry)))
|
|
(if value
|
|
(pcase field
|
|
;; https://owl.english.purdue.edu/owl/resource/560/06/
|
|
("author" (bibtex-completion-apa-format-authors value))
|
|
("editor" (bibtex-completion-apa-format-editors value))
|
|
;; When referring to books, chapters, articles, or Web pages,
|
|
;; capitalize only the first letter of the first word of a
|
|
;; title and subtitle, the first word after a colon or a dash
|
|
;; in the title, and proper nouns. Do not capitalize the first
|
|
;; letter of the second word in a hyphenated compound word.
|
|
("title" (replace-regexp-in-string ; remove braces
|
|
"[{}]"
|
|
""
|
|
(replace-regexp-in-string ; remove macros
|
|
"\\\\[[:alpha:]]+{"
|
|
""
|
|
(replace-regexp-in-string ; upcase initial letter
|
|
"^[[:alpha:]]"
|
|
'upcase
|
|
(replace-regexp-in-string ; preserve stuff in braces from being downcased
|
|
"\\(^[^{]*{\\)\\|\\(}[^{]*{\\)\\|\\(}.*$\\)\\|\\(^[^{}]*$\\)"
|
|
(lambda (x) (downcase (s-replace "\\" "\\\\" x)))
|
|
value)))))
|
|
("booktitle" value)
|
|
;; Maintain the punctuation and capitalization that is used by
|
|
;; the journal in its title.
|
|
("pages" (s-join "–" (s-split "[^0-9]+" value t)))
|
|
("doi" (s-concat " http://dx.doi.org/" value))
|
|
("year" (or value
|
|
(car (split-string (bibtex-completion-get-value "date" entry "") "-"))))
|
|
(_ value))
|
|
"")))))
|
|
|
|
(defun bibtex-completion-apa-format-authors (value)
|
|
(cl-loop for a in (s-split " and " value t)
|
|
if (s-index-of "{" a)
|
|
collect
|
|
(replace-regexp-in-string "[{}]" "" a)
|
|
into authors
|
|
else if (s-index-of "," a)
|
|
collect
|
|
(let ((p (s-split " *, *" a t)))
|
|
(concat
|
|
(car p) ", "
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(s-split " " (cadr p))))))
|
|
into authors
|
|
else
|
|
collect
|
|
(let ((p (s-split " " a t)))
|
|
(concat
|
|
(-last-item p) ", "
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(-butlast p)))))
|
|
into authors
|
|
finally return
|
|
(let ((l (length authors)))
|
|
(cond
|
|
((= l 1) (car authors))
|
|
((< l 8) (concat (s-join ", " (-butlast authors))
|
|
", & " (-last-item authors)))
|
|
(t (concat (s-join ", " (-slice authors 0 7)) ", …"))))))
|
|
|
|
(defun bibtex-completion-apa-format-authors-abbrev (value)
|
|
(cl-loop for a in (s-split " and " value t)
|
|
if (s-index-of "{" a)
|
|
collect
|
|
(replace-regexp-in-string "[{}]" "" a)
|
|
into authors
|
|
else if (s-index-of "," a)
|
|
collect
|
|
(let ((p (s-split " *, *" a t)))
|
|
(concat
|
|
(car p) ", "
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(s-split " " (cadr p))))))
|
|
into authors
|
|
else
|
|
collect
|
|
(let ((p (s-split " " a t)))
|
|
(concat
|
|
(-last-item p) ", "
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(-butlast p)))))
|
|
into authors
|
|
finally return
|
|
(let ((l (length authors)))
|
|
(cond
|
|
((= l 1) (car authors))
|
|
((= l 2) (concat (s-join " & " authors)))
|
|
(t (format "%s et al." (car authors)))))))
|
|
|
|
(defun bibtex-completion-apa-format-editors (value)
|
|
(cl-loop for a in (s-split " and " value t)
|
|
if (s-index-of "," a)
|
|
collect
|
|
(let ((p (s-split " *, *" a t)))
|
|
(concat
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(s-split " " (cadr p))))
|
|
" " (car p)))
|
|
into authors
|
|
else
|
|
collect
|
|
(let ((p (s-split " " a t)))
|
|
(concat
|
|
(s-join " " (-map (lambda (it) (concat (s-left 1 it) "."))
|
|
(-butlast p)))
|
|
" " (-last-item p)))
|
|
into authors
|
|
finally return
|
|
(let ((l (length authors)))
|
|
(cond
|
|
((= l 1) (car authors))
|
|
((< l 8) (concat (s-join ", " (-butlast authors))
|
|
", & " (-last-item authors)))
|
|
(t (concat (s-join ", " authors) ", ..."))))))
|
|
|
|
(defun bibtex-completion-get-value (field entry &optional default)
|
|
"Return the requested value or `default' if the value is not
|
|
defined. Surrounding curly braces are stripped."
|
|
(let ((value (cdr (assoc-string field entry 'case-fold))))
|
|
(if value
|
|
(replace-regexp-in-string
|
|
"\\(^[[:space:]]*[\"{][[:space:]]*\\)\\|\\([[:space:]]*[\"}][[:space:]]*$\\)"
|
|
""
|
|
(s-collapse-whitespace value))
|
|
default)))
|
|
|
|
(defun bibtex-completion-insert-key (keys)
|
|
"Insert BibTeX key at point."
|
|
(insert
|
|
(funcall 'bibtex-completion-format-citation-default keys)))
|
|
|
|
(defun bibtex-completion-insert-bibtex (keys)
|
|
"Insert BibTeX key at point."
|
|
(insert (s-join "\n" (--map (bibtex-completion-make-bibtex it) keys))))
|
|
|
|
(defun bibtex-completion-make-bibtex (key)
|
|
(let* ((entry (bibtex-completion-get-entry key))
|
|
(entry-type (bibtex-completion-get-value "=type=" entry)))
|
|
(format "@%s{%s,\n%s}\n"
|
|
entry-type key
|
|
(cl-loop
|
|
for field in entry
|
|
for name = (car field)
|
|
for value = (cdr field)
|
|
unless (member name
|
|
(append (-map (lambda (it) (if (symbolp it) (symbol-name it) it))
|
|
bibtex-completion-no-export-fields)
|
|
'("=type=" "=key=" "=has-pdf=" "=has-note=" "crossref")))
|
|
concat
|
|
(format " %s = {%s},\n" name value)))))
|
|
|
|
(defun bibtex-completion-add-PDF-attachment (keys)
|
|
"Attach the PDFs of the selected entries where available."
|
|
(dolist (key keys)
|
|
(let ((pdf (bibtex-completion-find-pdf key bibtex-completion-find-additional-pdfs)))
|
|
(if pdf
|
|
(mapc 'mml-attach-file pdf)
|
|
(message "No PDF(s) found for this entry: %s"
|
|
key)))))
|
|
|
|
(define-minor-mode bibtex-completion-notes-mode
|
|
"Minor mode for managing notes."
|
|
:keymap (let ((map (make-sparse-keymap)))
|
|
(define-key map (kbd "C-c C-c") 'bibtex-completion-exit-notes-buffer)
|
|
(define-key map (kbd "C-c C-w") 'org-refile)
|
|
map)
|
|
(setq-local
|
|
header-line-format
|
|
(substitute-command-keys
|
|
" Finish \\[bibtex-completion-exit-notes-buffer], refile \\[org-refile]")))
|
|
|
|
;; Define global minor mode. This is needed to the toggle minor mode.
|
|
(define-globalized-minor-mode bibtex-completion-notes-global-mode bibtex-completion-notes-mode bibtex-completion-notes-mode)
|
|
|
|
(defun bibtex-completion-exit-notes-buffer ()
|
|
"Exit notes buffer and delete its window.
|
|
This will also disable `bibtex-completion-notes-mode' and remove the header
|
|
line."
|
|
(interactive)
|
|
(widen)
|
|
(bibtex-completion-notes-global-mode -1)
|
|
(setq-local
|
|
header-line-format nil)
|
|
(save-buffer)
|
|
(let ((window (get-buffer-window (get-file-buffer bibtex-completion-notes-path))))
|
|
(if (and window (not (one-window-p window)))
|
|
(delete-window window)
|
|
(switch-to-buffer (other-buffer)))))
|
|
|
|
(defun bibtex-completion-edit-notes (keys)
|
|
"Open the notes associated with the selected entries using `find-file'."
|
|
(dolist (key keys)
|
|
(let* ((entry (bibtex-completion-get-entry key))
|
|
(year (or (bibtex-completion-get-value "year" entry)
|
|
(car (split-string (bibtex-completion-get-value "date" entry "") "-"))))
|
|
(entry (push (cons "year" year) entry)))
|
|
(if (and bibtex-completion-notes-path
|
|
(f-directory? bibtex-completion-notes-path))
|
|
; One notes file per publication:
|
|
(let* ((path (f-join bibtex-completion-notes-path
|
|
(s-concat key bibtex-completion-notes-extension))))
|
|
(find-file path)
|
|
(unless (f-exists? path)
|
|
(insert (s-format bibtex-completion-notes-template-multiple-files
|
|
'bibtex-completion-apa-get-value
|
|
entry))))
|
|
; One file for all notes:
|
|
(unless (and buffer-file-name
|
|
(f-same? bibtex-completion-notes-path buffer-file-name))
|
|
(find-file-other-window bibtex-completion-notes-path))
|
|
(widen)
|
|
(outline-show-all)
|
|
(goto-char (point-min))
|
|
(if (re-search-forward (format bibtex-completion-notes-key-pattern (regexp-quote key)) nil t)
|
|
; Existing entry found:
|
|
(when (eq major-mode 'org-mode)
|
|
(org-narrow-to-subtree)
|
|
(re-search-backward "^\*+ " nil t)
|
|
(org-cycle-hide-drawers nil)
|
|
(bibtex-completion-notes-mode 1))
|
|
; Create a new entry:
|
|
(goto-char (point-max))
|
|
(save-excursion (insert (s-format bibtex-completion-notes-template-one-file
|
|
'bibtex-completion-apa-get-value
|
|
entry)))
|
|
(re-search-forward "^*+ " nil t))
|
|
(when (eq major-mode 'org-mode)
|
|
(org-narrow-to-subtree)
|
|
(re-search-backward "^\*+ " nil t)
|
|
(org-cycle-hide-drawers nil)
|
|
(goto-char (point-max))
|
|
(bibtex-completion-notes-mode 1))))))
|
|
|
|
(defun bibtex-completion-buffer-visiting (file)
|
|
(or (get-file-buffer file)
|
|
(find-buffer-visiting file)))
|
|
|
|
(defun bibtex-completion-show-entry (keys)
|
|
"Show the first selected entry in the BibTeX file."
|
|
(catch 'break
|
|
(dolist (bib-file (bibtex-completion-normalize-bibliography 'main))
|
|
(let ((key (car keys))
|
|
(buf (bibtex-completion-buffer-visiting bib-file)))
|
|
(find-file bib-file)
|
|
(widen)
|
|
(if (eq major-mode 'org-mode)
|
|
(let* ((prop (if (boundp 'org-bibtex-key-property)
|
|
org-bibtex-key-property
|
|
"CUSTOM_ID"))
|
|
(match (org-find-property prop key)))
|
|
(when match
|
|
(goto-char match)
|
|
(org-show-entry)
|
|
(throw 'break t)))
|
|
(goto-char (point-min))
|
|
(when (re-search-forward
|
|
(concat "^@\\(" parsebib--bibtex-identifier
|
|
"\\)[[:space:]]*[\(\{][[:space:]]*"
|
|
(regexp-quote key) "[[:space:]]*,") nil t)
|
|
(throw 'break t)))
|
|
(unless buf
|
|
(kill-buffer))))))
|
|
|
|
(defun bibtex-completion-add-pdf-to-library (keys)
|
|
"Add a PDF to the library for the first selected entry. The PDF
|
|
can be added either from an open buffer, a file, or a URL."
|
|
(let* ((key (car keys))
|
|
(source (char-to-string
|
|
(read-char-choice "Add pdf from [b]uffer, [f]ile, or [u]rl? " '(?b ?f ?u))))
|
|
(buffer (when (string= source "b")
|
|
(read-buffer-to-switch "Add pdf buffer: ")))
|
|
(file (when (string= source "f")
|
|
(expand-file-name (read-file-name "Add pdf file: " nil nil t))))
|
|
(url (when (string= source "u")
|
|
(read-string "Add pdf URL: ")))
|
|
(path (-flatten (list bibtex-completion-library-path)))
|
|
(path (if (cdr path)
|
|
(completing-read "Add pdf to: " path nil t)
|
|
(car path)))
|
|
(pdf (expand-file-name (completing-read "Rename pdf to: "
|
|
(--map (s-concat key it)
|
|
(-flatten bibtex-completion-pdf-extension))
|
|
nil nil key)
|
|
path)))
|
|
(cond
|
|
(buffer
|
|
(with-current-buffer buffer
|
|
(write-file pdf t)))
|
|
(file
|
|
(copy-file file pdf 1))
|
|
(url
|
|
(url-copy-file url pdf 1)))))
|
|
|
|
(defun bibtex-completion-fallback-action (url-or-function search-expression)
|
|
(let ((browse-url-browser-function
|
|
(or bibtex-completion-browser-function
|
|
browse-url-browser-function)))
|
|
(cond
|
|
((stringp url-or-function)
|
|
(browse-url (format url-or-function (url-hexify-string search-expression))))
|
|
((functionp url-or-function)
|
|
(funcall url-or-function search-expression))
|
|
(t (error "Don't know how to interpret this: %s" url-or-function)))))
|
|
|
|
(defun bibtex-completion-fallback-candidates ()
|
|
"Compile list of fallback options. These consist of the online
|
|
resources defined in `bibtex-completion-fallback-options' plus
|
|
one entry for each bibliography file that will open that file for
|
|
editing."
|
|
(let ((bib-files (bibtex-completion-normalize-bibliography 'main)))
|
|
(-concat
|
|
(--map (cons (s-concat "Create new entry in " (f-filename it))
|
|
`(lambda (_search-expression) (find-file ,it) (goto-char (point-max)) (newline)))
|
|
bib-files)
|
|
bibtex-completion-fallback-options)))
|
|
|
|
(defun bibtex-completion-find-local-bibliography ()
|
|
"Return a list of BibTeX files associated with the current
|
|
file. If the current file is a BibTeX file, return this
|
|
file. Otherwise, try to use `reftex' to find the associated
|
|
BibTeX files. If this fails, return nil."
|
|
(or (and (buffer-file-name)
|
|
(string= (or (f-ext (buffer-file-name)) "") "bib")
|
|
(list (buffer-file-name)))
|
|
(and (buffer-file-name)
|
|
(require 'reftex-cite nil t)
|
|
(ignore-errors (reftex-get-bibfile-list)))))
|
|
|
|
(defun bibtex-completion-key-at-point ()
|
|
"Return the key of the BibTeX entry at point. If the current
|
|
file is a BibTeX file, return the key of the entry at
|
|
point. Otherwise, try to use `reftex' to check whether point is
|
|
at a citation macro, and if so return the key at
|
|
point. Otherwise, if the current file is an org-mode file, return
|
|
the value of `org-bibtex-key-property' (or
|
|
default to \"CUSTOM_ID\"). Otherwise, return nil."
|
|
(or (and (eq major-mode 'bibtex-mode)
|
|
(save-excursion
|
|
(bibtex-beginning-of-entry)
|
|
(and (looking-at bibtex-entry-maybe-empty-head)
|
|
(bibtex-key-in-head))))
|
|
(and (require 'reftex-parse nil t)
|
|
(save-excursion
|
|
(skip-chars-backward "[:space:],;}")
|
|
(let ((macro (reftex-what-macro 1)))
|
|
(and (stringp (car macro))
|
|
(string-match "\\`\\\\cite\\|cite\\'" (car macro))
|
|
;; allow '_' in citekeys
|
|
(let ((temp-syn-table (make-syntax-table)))
|
|
(modify-syntax-entry ?_ "_" temp-syn-table)
|
|
(with-syntax-table temp-syn-table
|
|
(thing-at-point 'symbol)))))))
|
|
(and (eq major-mode 'org-mode)
|
|
(let (key)
|
|
(and (setq key (org-entry-get nil
|
|
(if (boundp 'org-bibtex-key-property)
|
|
org-bibtex-key-property
|
|
"CUSTOM_ID")
|
|
t))
|
|
;; KEY may be the empty string the the property is
|
|
;; present but has no value
|
|
(> (length key) 0)
|
|
key)))))
|
|
|
|
(provide 'bibtex-completion)
|
|
|
|
;; Local Variables:
|
|
;; byte-compile-warnings: (not cl-functions obsolete)
|
|
;; coding: utf-8
|
|
;; indent-tabs-mode: nil
|
|
;; End:
|
|
|
|
;;; bibtex-completion.el ends here
|