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289 řádky
10 KiB
289 řádky
10 KiB
;;; ess-bugs-l.el --- ESS[BUGS] languages -*- lexical-binding: t; -*-
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;; Copyright (C) 2006-2011 Rodney Sparapani
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;; Author: Rodney Sparapani
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;; Created: 16 August 2006
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;; Maintainer: ESS-help <ess-help@r-project.org>
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;; This file is part of ESS
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;; This file is free software; you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation; either version 2, or (at your option)
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;; any later version.
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;;
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;; This file is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;;
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;; A copy of the GNU General Public License is available at
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;; https://www.r-project.org/Licenses/
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;;; Code:
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(require 'shell)
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(require 'ess-utils)
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(defvar ess-bugs-command)
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(defvar ess-bugs-chains)
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(defvar ess-jags-command)
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(defvar ess-jags-chains)
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(defvar ess-bugs-default-bins)
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(declare-function ess-bugs-na-bug "ess-bugs-d")
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(declare-function ess-jags-na-bug "ess-jags-d")
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(declare-function ess-bugs-na-bmd "ess-bugs-d")
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(declare-function ess-jags-na-jmd "ess-jags-d")
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(defgroup ess-bugs nil
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"ESS: BUGS."
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:group 'ess
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:prefix "ess-")
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(defcustom ess-bugs-batch-method
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(if (and ess-microsoft-p
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(fboundp 'w32-shell-dos-semantics)
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(w32-shell-dos-semantics))
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'dos
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'sh)
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"Method used by `ess-bugs-batch'.
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The default is based on the value of the Emacs variable `system-type'
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and, on Windows machines, the function `w32-shell-dos-semantics'.
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'sh if *shell* runs a Bourne-like or a C-like Unix shell
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'dos if *shell* runs a DOS-like Windows shell
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Unix users will get 'sh by default.
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Windows users running a DOS-like *shell* will get 'dos by default,
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while those running a Unix-like *shell* will get 'sh by default.
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Users whose default is not 'sh, but are accessing a remote machine with
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`telnet' or `ssh', should have the following in their init file:
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(setq-default ess-bugs-batch-method 'sh)"
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:group 'ess-bugs
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:type '(choice (const 'sh :tag "Bourne/C-like Unix Shell")
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(const 'dos :tag "DOS-like Windows shell")))
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(defcustom ess-bugs-batch-post-command
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(if (equal ess-bugs-batch-method 'sh) "&" " ")
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"ESS[BUGS]: Modifiers at the end of the batch BUGS command line."
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:group 'ess-bugs
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:type 'string
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)
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(defcustom ess-bugs-batch-pre-command
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(if (equal ess-bugs-batch-method 'sh) "nohup nice time"
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(if ess-microsoft-p "start"))
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"ESS[BUGS]: Modifiers at the beginning of the batch BUGS command line."
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:group 'ess-bugs
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:type 'string
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)
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(defcustom ess-bugs-default-burn-in "500"
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"ESS[BUGS]: Burn-in iterations to discard."
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:group 'ess-bugs
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:type 'string
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)
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(defcustom ess-bugs-default-update "1000"
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"ESS[BUGS]: Iterations to store."
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:group 'ess-bugs
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:type 'string
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)
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(defvar ess-bugs-batch-command ";"
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"ESS[BUGS]: The name of the command to run BUGS in batch mode."
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)
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(defvar ess-bugs-file "."
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"ESS[BUGS]: BUGS file with PATH.")
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(defvar ess-bugs-file-root "."
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"ESS[BUGS]: Root of BUGS file.")
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(defvar ess-bugs-file-suffix "."
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"ESS[BUGS]: Suffix of BUGS file.")
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(defvar ess-bugs-file-dir "."
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"ESS[BUGS]: Directory of BUGS file.")
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(defvar ess-bugs-file-data "..."
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"ESS[BUGS]: BUGS data file.")
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(defcustom ess-bugs-inits-suffix ".in"
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"ESS[BUGS]: BUGS init file suffix."
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:group 'ess-bugs
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:type 'string
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)
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(defcustom ess-bugs-data-suffix ".dat"
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"ESS[BUGS]: BUGS data file suffix."
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:group 'ess-bugs
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:type 'string
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)
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(defcustom ess-bugs-mode-hook nil
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"ESS[BUGS]: List of functions to call upon entering mode."
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:group 'ess-bugs
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:type 'hook)
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(defvar ess-bugs-monitor-vars " "
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"ESS[BUGS]: List of BUGS variables to be written out to a file.")
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(defvar ess-bugs-stats-vars " "
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"ESS[BUGS]: List of BUGS variables to be summarized with statistics.")
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(defvar ess-bugs-mode-map
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(let ((map (make-sparse-keymap)))
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(define-key map (quote [f2]) #'ess-revert-wisely)
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(define-key map "\C-c\C-c" #'ess-bugs-next-action)
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(define-key map "=" #'ess-bugs-hot-arrow)
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(define-key map "_" #'ess-bugs-hot-arrow)
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map)
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"ESS[BUGS]: Keymap for mode.")
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(defvar ess-bugs-syntax-table
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(let ((table (make-syntax-table)))
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(modify-syntax-entry ?\\ "." table)
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(modify-syntax-entry ?# "<" table)
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(modify-syntax-entry ?\n ">" table)
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(modify-syntax-entry ?\( "()" table)
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(modify-syntax-entry ?\) ")(" table)
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(modify-syntax-entry ?. "w" table)
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table)
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"ESS[BUGS]: Syntax table for mode.")
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(defun ess-bugs-file ()
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"ESS[BUGS]: Set internal variables dealing with BUGS files.
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Set `ess-bugs-file', `ess-bugs-file-root', `ess-bugs-file-suffix'
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and `ess-bugs-file-dir'."
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(let ((ess-bugs-temp-string (buffer-name)))
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(setq ess-bugs-file (expand-file-name ess-bugs-temp-string))
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(setq ess-bugs-file-dir
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(convert-standard-filename (file-name-directory ess-bugs-file)))
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(setq ess-bugs-file-root
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(file-name-nondirectory (file-name-sans-extension ess-bugs-file)))
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(if (fboundp 'file-name-extension)
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(setq ess-bugs-file-suffix (file-name-extension ess-bugs-temp-string))
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;;else
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(setq ess-bugs-file-suffix (car (last (split-string ess-bugs-temp-string "[.]")))))
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(setq ess-bugs-file-suffix
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(downcase (car (split-string (concat "." ess-bugs-file-suffix) "[<]"))))
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(setq ess-bugs-file (concat ess-bugs-file-dir ess-bugs-file-root ess-bugs-file-suffix))
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)
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)
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(defun ess-bugs-exit-notify-sh (string)
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"ESS[BUGS]: Detect completion or failure of submitted job and notify the user."
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(let* ((exit-done "\\[[0-9]+\\] *\\+* *\\(Exit\\|Done\\)[^\r\n]*")
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(beg (string-match exit-done string)))
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(if beg (message "%s" (substring string beg (match-end 0))))))
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(defun ess-bugs-hot-arrow ()
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"ESS[BUGS]: Substitute <- for = key press"
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(interactive)
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(insert " <- "))
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(defun ess-bugs-next-action ()
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"ESS[BUGS/JAGS]: Perform the appropriate next action."
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(interactive)
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(ess-bugs-file)
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(cond ((equal ".bug" ess-bugs-file-suffix) (ess-bugs-na-bug))
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((equal ".jag" ess-bugs-file-suffix) (ess-jags-na-bug))
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((equal ".bmd" ess-bugs-file-suffix)
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(ess-save-and-set-local-variables)
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(ess-bugs-na-bmd ess-bugs-command ess-bugs-chains))
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((equal ".jmd" ess-bugs-file-suffix)
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(ess-save-and-set-local-variables)
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(ess-jags-na-jmd ess-jags-command ess-jags-chains)))
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)
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(defun ess-bugs-sci-to-round-4-dp ()
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"ESS[BUGS]: round output from +/-0.000E+/-0 to 4 decimal places."
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(interactive)
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(setq buffer-read-only nil)
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(save-excursion (goto-char 0)
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(save-match-data (let ((ess-bugs-replacement-string nil)
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(ess-bugs-replacement-9 0)
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(ess-bugs-replacement-diff 0))
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(while (search-forward-regexp "-?[0-9][.][0-9][0-9][0-9]E[+-][0-9]" nil t)
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(setq ess-bugs-replacement-string
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(int-to-string (string-to-number (match-string 0))))
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(setq ess-bugs-replacement-diff (- (match-end 0) (match-beginning 0)))
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(save-match-data
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(setq ess-bugs-replacement-9
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(string-match "99999999999$" ess-bugs-replacement-string))
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(if (not ess-bugs-replacement-9)
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(setq ess-bugs-replacement-9
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(string-match "000000000001$" ess-bugs-replacement-string))))
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(if ess-bugs-replacement-9
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(setq ess-bugs-replacement-string
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(substring ess-bugs-replacement-string 0 ess-bugs-replacement-9)))
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(setq ess-bugs-replacement-diff
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(- ess-bugs-replacement-diff (string-width ess-bugs-replacement-string)))
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(while (> ess-bugs-replacement-diff 0)
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(setq ess-bugs-replacement-string (concat ess-bugs-replacement-string " "))
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(setq ess-bugs-replacement-diff (- ess-bugs-replacement-diff 1)))
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(replace-match ess-bugs-replacement-string))))))
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;;; ESS[BUGS-Shell] for running BUGS interactively
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(defgroup ess-bugs-shell nil
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"ESS: BUGS-Shell."
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:group 'ess-bugs
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:prefix "ess-")
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(defcustom ess-bugs-shell-buffer-name "BUGS"
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"ESS[BUGS-Shell]: The name of the BUGS-Shell buffer."
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:group 'ess-bugs-shell
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:type 'string)
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(defcustom ess-bugs-shell-command "OpenBUGS"
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"ESS[BUGS-Shell]: The name of the command to run BUGS interactively.
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Set to the name of the batch BUGS script that comes with ESS or
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to the name of BUGS command. Make sure it is in your PATH or
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add path to the command name."
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:group 'ess-bugs-shell
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:type 'string)
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(defcustom ess-bugs-shell-default-output-file-root "bugs"
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"ESS[BUGS-Shell]: Default value for the root of output files."
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:group 'ess-bugs-shell
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:type 'string)
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(defcustom ess-bugs-shell-mode-hook nil
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"ESS[BUGS-Shell]: List of functions to call upon entering mode."
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:group 'ess-bugs-shell
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:type 'hook)
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(defun ess-bugs-shell ()
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"Create a buffer with BUGS running as a subprocess."
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(interactive)
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(pop-to-buffer-same-window (concat "*" ess-bugs-shell-buffer-name "*"))
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(make-comint ess-bugs-shell-buffer-name ess-bugs-shell-command nil
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ess-bugs-default-bins ess-bugs-shell-default-output-file-root)
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(comint-mode)
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(setq shell-dirtrackp t
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major-mode 'bugs-shell-mode
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mode-name "ESS[BUGS-Shell]"
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comint-prompt-regexp "^Bugs> *")
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(make-local-variable 'font-lock-defaults)
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(setq font-lock-defaults '(ess-bugs-font-lock-keywords nil t))
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(run-mode-hooks 'ess-bugs-shell-mode-hook)
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)
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(provide 'ess-bugs-l)
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;;; ess-bugs-l.el ends here
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